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The map label for this gene is ychF [H]

Identifier: 209554109

GI number: 209554109

Start: 865786

End: 866892

Strand: Reverse

Name: ychF [H]

Synonym: UUR10_0700

Alternate gene names: 209554109

Gene position: 866892-865786 (Counterclockwise)

Preceding gene: 209554395

Following gene: 209554193

Centisome position: 99.13

GC content: 28.55

Gene sequence:

>1107_bases
ATGGCATTATCAGCAGGTATTGTTGGTTTACCAAATGTTGGCAAATCCACATTATTTAATACAATTACAAATTCAAAAGT
AGAAGCAGCCAACTATCCTTTTGCGACTATTGAACCTAATGTAGGAATTGTTAATATTAACGATTCACGTTTAAAAAAAT
TAGCAAGTTTAGTTATTCCTGACAAAATAGTTCCTACTACTTTTAAATTTGTTGATATTGCAGGACTTGTTAAAGGGGCA
TCACAAGGTGAAGGTTTGGGAAACCAGTTCTTAAGTAATATTCGTGAAGTTAATGCTATTTGTCATGTTGTTCGTTGCTT
TGATGATAAATCAATTACTCATGTTCACAATAAGATTGATGCTTTAGCAGATATTGAAGTTATTAATTATGAACTAATTT
TATCTGATCTTGATATTGTTGAAAAACGAATTAGTCGAATCAAAAAAAAGGCTGACTCAGGTGATAAAGATGCTAAAAAA
GAATATCTTATTTTATTTAATGTTCAACAAGCATTGAAACAAGGACGATTAGCATCAAGTGTTAAGTTGACTAAAGAAGA
GTTAAAAATAATTAACTCATTTAATTTAATTACACTAAAACCAGTTTTATATATTGCTAATATTTCTGAAAATGAAATTT
CAAATCCAGATTTAAATAGCGAATATTTAAAAATTAAAAAGTATGCTGAAGAAAATAATGCTAAGTGTGTTGCTTTATCA
GCTAAAATTGAATATGAAATTAGTATTTTAGATGAAGAATCAAAAGCAATGTTTATTCAAGAATTAGGAATGCAAACAAC
AGGTTTAGATGAAATTGTTAAACAAACTTATGATTTATTAAATTTAAAAACTTATTTTACATATGGAAAGCAAGAAGTAC
GTGCTTGAACATTTATGGATGGAATGAGTGCACCAGAATGCGCAGGAATCATTCATAGCGATTTTGAAAAAGGTTTTATT
AAAGCTGAAATTATGCACTATGATGATTTAGTTTCATTAGGTAGTGAACAAGCAGTTAAAGAAGCGGGAAAAGTTAGAAT
GGAGGGAAAGTCATATTTAATGAAAGATGGCGATATTTGCAATTTTAGATTTAATGTGACGAAATAA

Upstream 100 bases:

>100_bases
AAAGTTTTAGCTTATGGTGTTGATGCAATTAAAAACACAATTATTGAAAAATTCACTAAGTTTAATAGTTTAAATAAAGC
ATAAATGAAGGAGAAATAAA

Downstream 100 bases:

>100_bases
GGTTTTATGGCTAAAGCACATGCATTCTCAAAAAAAGTAGGATGAATAGAACTAATTACAGGTCCAATGTTTGCTGGTAA
AACAGCTGAGTTAATTCGAC

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MALSAGIVGLPNVGKSTLFNTITNSKVEAANYPFATIEPNVGIVNINDSRLKKLASLVIPDKIVPTTFKFVDIAGLVKGA
SQGEGLGNQFLSNIREVNAICHVVRCFDDKSITHVHNKIDALADIEVINYELILSDLDIVEKRISRIKKKADSGDKDAKK
EYLILFNVQQALKQGRLASSVKLTKEELKIINSFNLITLKPVLYIANISENEISNPDLNSEYLKIKKYAEENNAKCVALS
AKIEYEISILDEESKAMFIQELGMQTTGLDEIVKQTYDLLNLKTYFTYGKQEVRAWTFMDGMSAPECAGIIHSDFEKGFI
KAEIMHYDDLVSLGSEQAVKEAGKVRMEGKSYLMKDGDICNFRFNVTK

Sequences:

>Translated_368_residues
MALSAGIVGLPNVGKSTLFNTITNSKVEAANYPFATIEPNVGIVNINDSRLKKLASLVIPDKIVPTTFKFVDIAGLVKGA
SQGEGLGNQFLSNIREVNAICHVVRCFDDKSITHVHNKIDALADIEVINYELILSDLDIVEKRISRIKKKADSGDKDAKK
EYLILFNVQQALKQGRLASSVKLTKEELKIINSFNLITLKPVLYIANISENEISNPDLNSEYLKIKKYAEENNAKCVALS
AKIEYEISILDEESKAMFIQELGMQTTGLDEIVKQTYDLLNLKTYFTYGKQEVRA*TFMDGMSAPECAGIIHSDFEKGFI
KAEIMHYDDLVSLGSEQAVKEAGKVRMEGKSYLMKDGDICNFRFNVTK
>Mature_367_residues
ALSAGIVGLPNVGKSTLFNTITNSKVEAANYPFATIEPNVGIVNINDSRLKKLASLVIPDKIVPTTFKFVDIAGLVKGAS
QGEGLGNQFLSNIREVNAICHVVRCFDDKSITHVHNKIDALADIEVINYELILSDLDIVEKRISRIKKKADSGDKDAKKE
YLILFNVQQALKQGRLASSVKLTKEELKIINSFNLITLKPVLYIANISENEISNPDLNSEYLKIKKYAEENNAKCVALSA
KIEYEISILDEESKAMFIQELGMQTTGLDEIVKQTYDLLNLKTYFTYGKQEVRA*TFMDGMSAPECAGIIHSDFEKGFIK
AEIMHYDDLVSLGSEQAVKEAGKVRMEGKSYLMKDGDICNFRFNVTK

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=372, Percent_Identity=40.5913978494624, Blast_Score=271, Evalue=6e-73,
Organism=Homo sapiens, GI58761502, Length=220, Percent_Identity=35.9090909090909, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI24308117, Length=111, Percent_Identity=34.2342342342342, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1787454, Length=367, Percent_Identity=50.9536784741144, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1789574, Length=223, Percent_Identity=24.2152466367713, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=40.4371584699454, Blast_Score=280, Evalue=8e-76,
Organism=Saccharomyces cerevisiae, GI6319499, Length=375, Percent_Identity=38.1333333333333, Blast_Score=235, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6321773, Length=394, Percent_Identity=35.5329949238579, Blast_Score=208, Evalue=1e-54,
Organism=Saccharomyces cerevisiae, GI6321649, Length=266, Percent_Identity=30.4511278195489, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6321962, Length=129, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24640873, Length=368, Percent_Identity=39.945652173913, Blast_Score=264, Evalue=7e-71,
Organism=Drosophila melanogaster, GI24640877, Length=368, Percent_Identity=39.945652173913, Blast_Score=264, Evalue=7e-71,
Organism=Drosophila melanogaster, GI24640875, Length=368, Percent_Identity=39.945652173913, Blast_Score=264, Evalue=7e-71,
Organism=Drosophila melanogaster, GI24640879, Length=327, Percent_Identity=37.6146788990826, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24585318, Length=198, Percent_Identity=30.8080808080808, Blast_Score=85, Evalue=1e-16,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40821; Mature: 40689

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSAGIVGLPNVGKSTLFNTITNSKVEAANYPFATIEPNVGIVNINDSRLKKLASLVIP
CCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCEEEECCCEEEEECCHHHHHHHHHHHCC
DKIVPTTFKFVDIAGLVKGASQGEGLGNQFLSNIREVNAICHVVRCFDDKSITHVHNKID
CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALADIEVINYELILSDLDIVEKRISRIKKKADSGDKDAKKEYLILFNVQQALKQGRLASS
HHHCEEEEEHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHCCCCHHH
VKLTKEELKIINSFNLITLKPVLYIANISENEISNPDLNSEYLKIKKYAEENNAKCVALS
HHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
AKIEYEISILDEESKAMFIQELGMQTTGLDEIVKQTYDLLNLKTYFTYGKQEVRATFMDG
EEEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
MSAPECAGIIHSDFEKGFIKAEIMHYDDLVSLGSEQAVKEAGKVRMEGKSYLMKDGDICN
CCCCHHHHHHHHHHHCCCEEEEEECHHHHHHCCCHHHHHHHHCEEECCCCEEECCCCEEE
FRFNVTK
EEEEECC
>Mature Secondary Structure 
ALSAGIVGLPNVGKSTLFNTITNSKVEAANYPFATIEPNVGIVNINDSRLKKLASLVIP
CCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCEEEECCCEEEEECCHHHHHHHHHHHCC
DKIVPTTFKFVDIAGLVKGASQGEGLGNQFLSNIREVNAICHVVRCFDDKSITHVHNKID
CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALADIEVINYELILSDLDIVEKRISRIKKKADSGDKDAKKEYLILFNVQQALKQGRLASS
HHHCEEEEEHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHCCCCHHH
VKLTKEELKIINSFNLITLKPVLYIANISENEISNPDLNSEYLKIKKYAEENNAKCVALS
HHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
AKIEYEISILDEESKAMFIQELGMQTTGLDEIVKQTYDLLNLKTYFTYGKQEVRATFMDG
EEEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
MSAPECAGIIHSDFEKGFIKAEIMHYDDLVSLGSEQAVKEAGKVRMEGKSYLMKDGDICN
CCCCHHHHHHHHHHHCCCEEEEEECHHHHHHCCCHHHHHHHHCEEECCCCEEECCCCEEE
FRFNVTK
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]