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The map label for this gene is ycfH [C]

Identifier: 209554090

GI number: 209554090

Start: 17621

End: 18418

Strand: Reverse

Name: ycfH [C]

Synonym: UUR10_0017

Alternate gene names: 209554090

Gene position: 18418-17621 (Counterclockwise)

Preceding gene: 209554346

Following gene: 209554530

Centisome position: 2.11

GC content: 26.94

Gene sequence:

>798_bases
ATGTTAGAAAAAATAAAAATTATTGACACTCACACACATCCCAATATTGAACCACTAATTGATGAATTTGATGATATTAT
TGCTGAATGCTATAAACAAGGTGTTGGGTTAAATATTGTTGGTGTTGATTTAAAAAGTTCGCAAATTGCGATCGAACAGG
CTAAAAAATTTGCATTTTTAACTTGTAGTGTTGCCATTCATCCAAATGACTTACATAATATAGAAGAAGATTTTGTCGCT
TTAGAAAAATTAGTGAAAGAAAATGTTGATTACATAAGTTGTATTGGTGAATGTGGATTAGATTATTATCATGAACAAGA
ATATGACCATGATTTTCAAAAATATTGATTTAAAAAACATATTGAATTAGCAAAAAAATATCATAAACCACTAATGTTAC
ATATTCGTAATGCACATGATGATGCAATTGCTATTTTAAAAGAATTAGATGTTAAAGATGCCATCATACATTGTTTTACA
GATAAGAAAAAATATGCAGAACAATATATTAAAATGGGTTATTATCTTTCATATCCTGGCGTAATTACTTTTAAACCAAC
AAAAAACAATCAAATAGATGAGTTACATGAAGCAATTAAAATAACGCCACTTGATAAAATTTTAGTTGAAACAGATGCCC
CTTATTTAACGCCTACTCCTAAACGTGGCCAAATTAACTATCCTTATTATGTACTATATACATCTGCATTTATTGCTAAT
TTATTAGGAATTACCTACGAAAAAATGCAAAATATTCTCTTGCAAAATGCCTTAAGAATTTTAAATTTTAAAAAATAA

Upstream 100 bases:

>100_bases
TTAGAATTTTGTAATTTACGTTTAAATGAACTATTAGGAATAGGTAGTGAATACGATTTCTTAGATGATTTATTTAAAAA
TTTTTGCGTAGGTAAATAGT

Downstream 100 bases:

>100_bases
AAGAGCACTTTTAAATAAAAAAGGTGCTTTTTTACACAAAAAAGTAAAAATTAAGAGCTTAACTTATATATACAAGTTTA
TTTTTTGTATAATCTTACTA

Product: deoxyribonuclease, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLEKIKIIDTHTHPNIEPLIDEFDDIIAECYKQGVGLNIVGVDLKSSQIAIEQAKKFAFLTCSVAIHPNDLHNIEEDFVA
LEKLVKENVDYISCIGECGLDYYHEQEYDHDFQKYWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELDVKDAIIHCFT
DKKKYAEQYIKMGYYLSYPGVITFKPTKNNQIDELHEAIKITPLDKILVETDAPYLTPTPKRGQINYPYYVLYTSAFIAN
LLGITYEKMQNILLQNALRILNFKK

Sequences:

>Translated_265_residues
MLEKIKIIDTHTHPNIEPLIDEFDDIIAECYKQGVGLNIVGVDLKSSQIAIEQAKKFAFLTCSVAIHPNDLHNIEEDFVA
LEKLVKENVDYISCIGECGLDYYHEQEYDHDFQKY*FKKHIELAKKYHKPLMLHIRNAHDDAIAILKELDVKDAIIHCFT
DKKKYAEQYIKMGYYLSYPGVITFKPTKNNQIDELHEAIKITPLDKILVETDAPYLTPTPKRGQINYPYYVLYTSAFIAN
LLGITYEKMQNILLQNALRILNFKK
>Mature_265_residues
MLEKIKIIDTHTHPNIEPLIDEFDDIIAECYKQGVGLNIVGVDLKSSQIAIEQAKKFAFLTCSVAIHPNDLHNIEEDFVA
LEKLVKENVDYISCIGECGLDYYHEQEYDHDFQKY*FKKHIELAKKYHKPLMLHIRNAHDDAIAILKELDVKDAIIHCFT
DKKKYAEQYIKMGYYLSYPGVITFKPTKNNQIDELHEAIKITPLDKILVETDAPYLTPTPKRGQINYPYYVLYTSAFIAN
LLGITYEKMQNILLQNALRILNFKK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=29.5566502463054, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI110349730, Length=175, Percent_Identity=28, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI226061853, Length=174, Percent_Identity=27.5862068965517, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI110349734, Length=174, Percent_Identity=28.1609195402299, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=184, Percent_Identity=29.8913043478261, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI226061614, Length=175, Percent_Identity=26.8571428571429, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI226061595, Length=171, Percent_Identity=26.9005847953216, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI225903424, Length=176, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=30.6818181818182, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI48994985, Length=228, Percent_Identity=29.3859649122807, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=25.6704980842912, Blast_Score=95, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=210, Percent_Identity=30, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=27.6119402985075, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=183, Percent_Identity=31.6939890710383, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17565396, Length=154, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221330018, Length=206, Percent_Identity=28.1553398058252, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24586117, Length=206, Percent_Identity=28.1553398058252, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648690, Length=229, Percent_Identity=27.9475982532751, Blast_Score=81, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30624; Mature: 30624

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKIKIIDTHTHPNIEPLIDEFDDIIAECYKQGVGLNIVGVDLKSSQIAIEQAKKFAFL
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHEEEE
TCSVAIHPNDLHNIEEDFVALEKLVKENVDYISCIGECGLDYYHEQEYDHDFQKYFKKHI
EEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHH
ELAKKYHKPLMLHIRNAHDDAIAILKELDVKDAIIHCFTDKKKYAEQYIKMGYYLSYPGV
HHHHHHCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCEEEECCCE
ITFKPTKNNQIDELHEAIKITPLDKILVETDAPYLTPTPKRGQINYPYYVLYTSAFIANL
EEECCCCCCCHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHH
LGITYEKMQNILLQNALRILNFKK
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLEKIKIIDTHTHPNIEPLIDEFDDIIAECYKQGVGLNIVGVDLKSSQIAIEQAKKFAFL
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHEEEE
TCSVAIHPNDLHNIEEDFVALEKLVKENVDYISCIGECGLDYYHEQEYDHDFQKYFKKHI
EEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHH
ELAKKYHKPLMLHIRNAHDDAIAILKELDVKDAIIHCFTDKKKYAEQYIKMGYYLSYPGV
HHHHHHCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCEEEECCCE
ITFKPTKNNQIDELHEAIKITPLDKILVETDAPYLTPTPKRGQINYPYYVLYTSAFIANL
EEECCCCCCCHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHH
LGITYEKMQNILLQNALRILNFKK
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11048724 [H]