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The map label for this gene is pecS [H]

Identifier: 209551853

GI number: 209551853

Start: 4456961

End: 4457461

Strand: Reverse

Name: pecS [H]

Synonym: Rleg2_4285

Alternate gene names: 209551853

Gene position: 4457461-4456961 (Counterclockwise)

Preceding gene: 209551855

Following gene: 209551851

Centisome position: 98.23

GC content: 63.67

Gene sequence:

>501_bases
ATGAGCAAAGACAGCAGCATGGATCACGTCGACAAGATCCTGGCGCAATGGCGACAGGAGCGGCCGGACCTCGACGTCGA
ACCGATGGGCCTGCTCGGACGGCTGAAGCGCCTCGGCACCCATCTCGGCCGCGAAGTGGAGGCGGTGCTCTTAAAACACG
GGCTTTCGACGTCCGCCTTCGACGTGCTCGCCACCCTCCGCCGCGCCGGCGCCCCCCACCGGCTTTCGCCGGGCGAGCTC
CTGGAGATGACCATGGTCAGCTCCGGCACGATGACGAACCGCATCGACCAGCTGGAGAAAGCGGGCTTCGTCGAGCGCGT
CGTCAATCCGGATGACAGGCGCAGCGTGTTGATCGCACTGACGGACAAGGGGCTGGCGACGGTCGAGACCGCCGTTGGTG
CGCATGTCGCCAATCAGCACCGGCTGATGGGAAATTTAAGCGCTGCCGACAAGGCGGAACTCGACAGGTTGCTGCGGAAA
TTTCTCTCGGATTTCGAATAG

Upstream 100 bases:

>100_bases
AGCGGAGCTTTGTCTTCATATCAAGAATCTCTATTTCAAGATAAATGCACCTTACGCCTTTTTATCTTGACGTCAAGATA
ATGGCTGTTATCGGTGGATC

Downstream 100 bases:

>100_bases
TGTTTCACCATCCAGCGAAGTGCTTGCGGCATGGATACTCGGGTCAAGCCCGAGTAGGACGGAGAGTGGGGAGCACGACC
GGCAAGAGGCGAGACGTCTG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSKDSSMDHVDKILAQWRQERPDLDVEPMGLLGRLKRLGTHLGREVEAVLLKHGLSTSAFDVLATLRRAGAPHRLSPGEL
LEMTMVSSGTMTNRIDQLEKAGFVERVVNPDDRRSVLIALTDKGLATVETAVGAHVANQHRLMGNLSAADKAELDRLLRK
FLSDFE

Sequences:

>Translated_166_residues
MSKDSSMDHVDKILAQWRQERPDLDVEPMGLLGRLKRLGTHLGREVEAVLLKHGLSTSAFDVLATLRRAGAPHRLSPGEL
LEMTMVSSGTMTNRIDQLEKAGFVERVVNPDDRRSVLIALTDKGLATVETAVGAHVANQHRLMGNLSAADKAELDRLLRK
FLSDFE
>Mature_165_residues
SKDSSMDHVDKILAQWRQERPDLDVEPMGLLGRLKRLGTHLGREVEAVLLKHGLSTSAFDVLATLRRAGAPHRLSPGELL
EMTMVSSGTMTNRIDQLEKAGFVERVVNPDDRRSVLIALTDKGLATVETAVGAHVANQHRLMGNLSAADKAELDRLLRKF
LSDFE

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18349; Mature: 18218

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDSSMDHVDKILAQWRQERPDLDVEPMGLLGRLKRLGTHLGREVEAVLLKHGLSTSAF
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DVLATLRRAGAPHRLSPGELLEMTMVSSGTMTNRIDQLEKAGFVERVVNPDDRRSVLIAL
HHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
TDKGLATVETAVGAHVANQHRLMGNLSAADKAELDRLLRKFLSDFE
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKDSSMDHVDKILAQWRQERPDLDVEPMGLLGRLKRLGTHLGREVEAVLLKHGLSTSAF
CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DVLATLRRAGAPHRLSPGELLEMTMVSSGTMTNRIDQLEKAGFVERVVNPDDRRSVLIAL
HHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
TDKGLATVETAVGAHVANQHRLMGNLSAADKAELDRLLRKFLSDFE
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]