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The map label for this gene is deoC [H]

Identifier: 209551747

GI number: 209551747

Start: 4351821

End: 4352597

Strand: Direct

Name: deoC [H]

Synonym: Rleg2_4176

Alternate gene names: 209551747

Gene position: 4351821-4352597 (Clockwise)

Preceding gene: 209551746

Following gene: 209551748

Centisome position: 95.9

GC content: 62.93

Gene sequence:

>777_bases
ATGAATAGCCATTCCAACCGGGAAACGGCGGCTGTTGCCCTTTCCCTACTCGATCTGACCAATTTGAAGGATGATTGCAC
CGAAGCGCAGATCGAGGCACTCTGCACCCGCGCGCAGACGCCCTATGGCAACAGCGCCGCCATCTGCATCTGGCCGCGCT
TCGTTGCTTATGCCCGCAACATCCTCGGCACCGGCCATGCCGTGCGGATCGCCACCGTCGTCAATTTCCCCTCGGGTGAC
ATGGAAGTGGCCGACGTTGCCGCCGAAACCCGTGAGGCGATTGCCGACGGCGCCGATGAAATCGATCTGGTCATTCCCTA
CCGCAAGCTCATATCAGGCAATGAGAAGGCGGTGACCGACATGGTCAAGGCAATTCGCGCCGAATGCGCCGGTCCCGTGC
TGCTGAAAGTCATTATCGAGGCCGGCGAGTTGAAGGACGCGGCCTTGATCCGCCGCGCCTCCGAACTTGCCATCGAAGCC
GGCGCCGATTTCATCAAGACCTCCACCGGCAAGGTCGCCGTCAACGCGACGCTCGAAGCCGCCGACATCATGATCCGCGC
CATTCGCGAGAGCGGCCGCAAGGTCGGCTTCAAGCCGGCCGGCGGCATCGGCTCGGTGGCCGATGCCGCGCTTTATCTGA
GCCTGGCCGAAACCATCATGGCGCCCGACTGGGCGATGCCGTCGACCTTCCGCTTCGGCGCTTCCGGCCTGCTCGACGAT
ATCCTGGCGGTTCTGAGCGGAACACAATCCGCACCCGCTGCGGCGTCGAGCTATTGA

Upstream 100 bases:

>100_bases
GGCGTAAAGTCTGAATCCTGTTCTACATTAGATAGTGAGAGCATGCTGTCATGAGAAAACCGCTCACACTTTTCGGCATC
ATGCTCTAGAGGAAGCGAAA

Downstream 100 bases:

>100_bases
AATGATCCCGCAGGAGATCATCCGGCGCAAACGCGATGGCGACGAACTCGACCCCGCCGATATCCGGTCTTTCATCGCAG
CCCTCGCGGCCGGCCAGCTG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNSHSNRETAAVALSLLDLTNLKDDCTEAQIEALCTRAQTPYGNSAAICIWPRFVAYARNILGTGHAVRIATVVNFPSGD
MEVADVAAETREAIADGADEIDLVIPYRKLISGNEKAVTDMVKAIRAECAGPVLLKVIIEAGELKDAALIRRASELAIEA
GADFIKTSTGKVAVNATLEAADIMIRAIRESGRKVGFKPAGGIGSVADAALYLSLAETIMAPDWAMPSTFRFGASGLLDD
ILAVLSGTQSAPAAASSY

Sequences:

>Translated_258_residues
MNSHSNRETAAVALSLLDLTNLKDDCTEAQIEALCTRAQTPYGNSAAICIWPRFVAYARNILGTGHAVRIATVVNFPSGD
MEVADVAAETREAIADGADEIDLVIPYRKLISGNEKAVTDMVKAIRAECAGPVLLKVIIEAGELKDAALIRRASELAIEA
GADFIKTSTGKVAVNATLEAADIMIRAIRESGRKVGFKPAGGIGSVADAALYLSLAETIMAPDWAMPSTFRFGASGLLDD
ILAVLSGTQSAPAAASSY
>Mature_258_residues
MNSHSNRETAAVALSLLDLTNLKDDCTEAQIEALCTRAQTPYGNSAAICIWPRFVAYARNILGTGHAVRIATVVNFPSGD
MEVADVAAETREAIADGADEIDLVIPYRKLISGNEKAVTDMVKAIRAECAGPVLLKVIIEAGELKDAALIRRASELAIEA
GADFIKTSTGKVAVNATLEAADIMIRAIRESGRKVGFKPAGGIGSVADAALYLSLAETIMAPDWAMPSTFRFGASGLLDD
ILAVLSGTQSAPAAASSY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=249, Percent_Identity=38.5542168674699, Blast_Score=159, Evalue=2e-39,
Organism=Escherichia coli, GI1790841, Length=227, Percent_Identity=57.7092511013216, Blast_Score=236, Evalue=1e-63,
Organism=Caenorhabditis elegans, GI17533015, Length=251, Percent_Identity=39.8406374501992, Blast_Score=161, Evalue=3e-40,
Organism=Drosophila melanogaster, GI19922098, Length=253, Percent_Identity=39.5256916996047, Blast_Score=143, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27026; Mature: 27026

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSHSNRETAAVALSLLDLTNLKDDCTEAQIEALCTRAQTPYGNSAAICIWPRFVAYARN
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
ILGTGHAVRIATVVNFPSGDMEVADVAAETREAIADGADEIDLVIPYRKLISGNEKAVTD
HHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCHHHHHH
MVKAIRAECAGPVLLKVIIEAGELKDAALIRRASELAIEAGADFIKTSTGKVAVNATLEA
HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEHHHH
ADIMIRAIRESGRKVGFKPAGGIGSVADAALYLSLAETIMAPDWAMPSTFRFGASGLLDD
HHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHH
ILAVLSGTQSAPAAASSY
HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNSHSNRETAAVALSLLDLTNLKDDCTEAQIEALCTRAQTPYGNSAAICIWPRFVAYARN
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
ILGTGHAVRIATVVNFPSGDMEVADVAAETREAIADGADEIDLVIPYRKLISGNEKAVTD
HHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCHHHHHH
MVKAIRAECAGPVLLKVIIEAGELKDAALIRRASELAIEAGADFIKTSTGKVAVNATLEA
HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEHHHH
ADIMIRAIRESGRKVGFKPAGGIGSVADAALYLSLAETIMAPDWAMPSTFRFGASGLLDD
HHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHH
ILAVLSGTQSAPAAASSY
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]