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The map label for this gene is rbfA [H]

Identifier: 209551637

GI number: 209551637

Start: 4240666

End: 4241070

Strand: Reverse

Name: rbfA [H]

Synonym: Rleg2_4066

Alternate gene names: 209551637

Gene position: 4241070-4240666 (Counterclockwise)

Preceding gene: 209551638

Following gene: 209551636

Centisome position: 93.46

GC content: 60.74

Gene sequence:

>405_bases
ATGACCAGAGCAACTTCTTCCGCGCCTTCGCAGCGCATGCTGCGCGTTGGCGAACAGGTCCGCGCCGCGATCACCCAGGT
ACTGCAGCGCGGCGAAGTGCGCGACGACGTCATCGAAGCGACGGTGATCTCGATCTCGGAAGTGCGCATGTCGCCCGACC
TGAAGATCGCCACCGCCTATGTGACGCCGCTTGGCGTTTCCGACCACAGCGTCGTCATCGAGGCGTTGAACCGTCATGCG
AGGTATATCCGCGGCAGGCTCGGGCAGCAGCTTCGGCAAATGAAATACATGCCGGAAGTGCGCTTCCGCGACGATACCAG
CTTCGACAACTACAAGAAAATCGACGAGCTGCTGCGTTCGCCCGAGGTGAGCCGCGATCTCGACGGCGATAACGACGAAC
AATAA

Upstream 100 bases:

>100_bases
TTTCGGGCATCCGCCGGCTTGACCTTTTCGGCCAAAGGAGTCATTGACGCTCTCCTTCGACGGGTTCGATTCCCAGCCGC
ATCGGCAAATAGAGATAACA

Downstream 100 bases:

>100_bases
ACAGAAGAGACGCATGTCCAAACCACGCAAACCCAAAGGCAGGCCGATTTCCGGCTGGCTGATCCTCGACAAACCGGTGG
ATTTCGGCTCGACGGAAGCC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MTRATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVTPLGVSDHSVVIEALNRHA
RYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEVSRDLDGDNDEQ

Sequences:

>Translated_134_residues
MTRATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVTPLGVSDHSVVIEALNRHA
RYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEVSRDLDGDNDEQ
>Mature_133_residues
TRATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVTPLGVSDHSVVIEALNRHAR
YIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEVSRDLDGDNDEQ

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15277; Mature: 15145

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
VTPLGVSDHSVVIEALNRHARYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRS
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
PEVSRDLDGDNDEQ
CCCCCCCCCCCCCC
>Mature Secondary Structure 
TRATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE
VTPLGVSDHSVVIEALNRHARYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRS
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
PEVSRDLDGDNDEQ
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA