Click here to switch to the map view.

The map label for this gene is ytfA [C]

Identifier: 209551585

GI number: 209551585

Start: 4184287

End: 4184964

Strand: Reverse

Name: ytfA [C]

Synonym: Rleg2_4014

Alternate gene names: 209551585

Gene position: 4184964-4184287 (Counterclockwise)

Preceding gene: 209551593

Following gene: 209551584

Centisome position: 92.22

GC content: 60.47

Gene sequence:

>678_bases
ATGAACGACAACGGCGAAAACGGGGAGAAAAAAAAATCCCGGCGCCCATCTCAGGAACGCACGGCGCAACGCGATCCGGA
GCGGACGCGCGCCGCGATCCTGGAAGCGGCTACCCGAGAATTTGCTGAAAACGGCATGGGCGGGGCCCGTGTTGACGCCA
TTGCCGAGCGCGCCGGCACCAACAAGCGCATGCTCTACCACTATTTTGGCGACAAGGAGCAGCTCTATCTGAGAGTCCTC
GAAGAAGCCTATGTCGGCATCCGCACCGCCGAGCGCGCGCTGCATATCGGCGACCGCAGCCCCGAGGAGGGCATCGGCGA
ACTGGCGCTCTTCACCTGGCGTTATTTTCTCCAGCACCCGGAATTCCTCAGCCTGCTCGGCACGGAAAATCTGCATCGGG
CCCGCTGGCTGCGCCAGTCCGTTCGGCTCAAGGAACTGCATTCGCATCTGATCGGCGAGCTTTCTGATGTGCTCGAGCGC
GGAAAGAAGCAAGGCGTCTTCGTCGAGACCGCCGATCCGCTGCACGTCTATCTGACGATCGCCTCGCTCGGCTATTTCTA
CCTGTCCAACCAGTACACGCTTTCGACGATCTTCGGCCGCGACCTGATCGAGCCGAACCATCTCAATGCCTGGGAAAGAC
ATATCGTCCACGTGACGCTCGCCTCGATCAAGCATTAG

Upstream 100 bases:

>100_bases
AAGCGGGGTGTCGGTTCTTGCTCGCCGCCCTTCTAAATTCGGTTTTTACAATTTCGCACCGAAGGCTTATGAGCGCAACA
TGCGAGACGGAGGGGAAACG

Downstream 100 bases:

>100_bases
AGCCTTTCCGGGTTAGATTGCAGCATTCTGTTGGCTCAAACGGAGTCGGATGGTCGACCGGCCGGCGCGCGTCGTAGCCA
AGCTCTACGGCCAAGCCGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; TetR Family Protein Regulatory Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNDNGENGEKKKSRRPSQERTAQRDPERTRAAILEAATREFAENGMGGARVDAIAERAGTNKRMLYHYFGDKEQLYLRVL
EEAYVGIRTAERALHIGDRSPEEGIGELALFTWRYFLQHPEFLSLLGTENLHRARWLRQSVRLKELHSHLIGELSDVLER
GKKQGVFVETADPLHVYLTIASLGYFYLSNQYTLSTIFGRDLIEPNHLNAWERHIVHVTLASIKH

Sequences:

>Translated_225_residues
MNDNGENGEKKKSRRPSQERTAQRDPERTRAAILEAATREFAENGMGGARVDAIAERAGTNKRMLYHYFGDKEQLYLRVL
EEAYVGIRTAERALHIGDRSPEEGIGELALFTWRYFLQHPEFLSLLGTENLHRARWLRQSVRLKELHSHLIGELSDVLER
GKKQGVFVETADPLHVYLTIASLGYFYLSNQYTLSTIFGRDLIEPNHLNAWERHIVHVTLASIKH
>Mature_225_residues
MNDNGENGEKKKSRRPSQERTAQRDPERTRAAILEAATREFAENGMGGARVDAIAERAGTNKRMLYHYFGDKEQLYLRVL
EEAYVGIRTAERALHIGDRSPEEGIGELALFTWRYFLQHPEFLSLLGTENLHRARWLRQSVRLKELHSHLIGELSDVLER
GKKQGVFVETADPLHVYLTIASLGYFYLSNQYTLSTIFGRDLIEPNHLNAWERHIVHVTLASIKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25895; Mature: 25895

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNGENGEKKKSRRPSQERTAQRDPERTRAAILEAATREFAENGMGGARVDAIAERAGT
CCCCCCCCCHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
NKRMLYHYFGDKEQLYLRVLEEAYVGIRTAERALHIGDRSPEEGIGELALFTWRYFLQHP
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
EFLSLLGTENLHRARWLRQSVRLKELHSHLIGELSDVLERGKKQGVFVETADPLHVYLTI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEHHH
ASLGYFYLSNQYTLSTIFGRDLIEPNHLNAWERHIVHVTLASIKH
HHHHHHHHCCCEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDNGENGEKKKSRRPSQERTAQRDPERTRAAILEAATREFAENGMGGARVDAIAERAGT
CCCCCCCCCHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
NKRMLYHYFGDKEQLYLRVLEEAYVGIRTAERALHIGDRSPEEGIGELALFTWRYFLQHP
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
EFLSLLGTENLHRARWLRQSVRLKELHSHLIGELSDVLERGKKQGVFVETADPLHVYLTI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEHHH
ASLGYFYLSNQYTLSTIFGRDLIEPNHLNAWERHIVHVTLASIKH
HHHHHHHHCCCEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA