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The map label for this gene is yggS [C]

Identifier: 209551494

GI number: 209551494

Start: 4071987

End: 4072646

Strand: Reverse

Name: yggS [C]

Synonym: Rleg2_3923

Alternate gene names: 209551494

Gene position: 4072646-4071987 (Counterclockwise)

Preceding gene: 209551498

Following gene: 209551493

Centisome position: 89.75

GC content: 65.3

Gene sequence:

>660_bases
ATGGAACTTCAAGAGCGCTTGAACGACGTGCGGTCGCGGATTGCGGCTGGTGAACGCCAGGCAGCCCGCCCTGCGGGTTC
CGTTGAGCTCGTCGCGGTGTCGAAGACCTTCGAGGCGGAGGCGATCCGCCCGGCCATCGACGCCGGGCAGCGCGTCTTCG
GCGAGAACCGGGTGCAGGAGAGCCAGGGTAAGTGGCCGGCGCTGAAGGCCGAGCGGCCGGATATCGTGCTGCACCTGATC
GGACCGCTGCAATCGAACAAGGCGGCGGATGCGGTGGCGCTTTTCGACGTCATCGAGACGGTGGATCGGGAAAAGATCGC
CCGCGCGCTTGCCGAGGAGATGAAGCGGCAGGACAAGAGGCCGCGGCTCTACGTCCAGGTCAATACCGGGCTCGAGCCGC
AGAAAGCCGGCATCGCGCCTGACGATACGCCGGCCTTCGTCAGCCTTTGCCGCGACGAACTCGGTCTTTCCATCGAAGGT
CTGATGTGCATTCCGCCTGCCGAGGAAAACCCCGGGCCGCATTTCGCCCTGCTGGCAAAGCTCGCGCTCAAATGCGGCGT
TGAAAAACTGTCGATGGGCATGTCGGGGGACTACGAGACGGCGATCGCCTTCGGCGCCACCAGCGTGCGCGTGGGATCGG
CGATTTTCGGCGCTCGCTGA

Upstream 100 bases:

>100_bases
TCCTGGCTCGAGCGATTTCGCGAGAGCGGGTCTTGGCAAGCACAGATTGGCTGGTTAGTTCATTGCCAATCCTTTCATGC
TGGTATGTCGAGGCAGAACG

Downstream 100 bases:

>100_bases
TACTCTGCTTTGGTCGGGCTTCCCGTTCCCCCTACTGCTGCCTAGATTGATATCGACGCTTGCATATCCTGGGGAGGAGC
AGATGCAGAACGGCTATCAT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQESQGKWPALKAERPDIVLHLI
GPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKRPRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEG
LMCIPPAEENPGPHFALLAKLALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR

Sequences:

>Translated_219_residues
MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQESQGKWPALKAERPDIVLHLI
GPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKRPRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEG
LMCIPPAEENPGPHFALLAKLALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR
>Mature_219_residues
MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQESQGKWPALKAERPDIVLHLI
GPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKRPRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEG
LMCIPPAEENPGPHFALLAKLALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=229, Percent_Identity=37.117903930131, Blast_Score=108, Evalue=3e-24,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=36.9098712446352, Blast_Score=121, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=38.9908256880734, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=214, Percent_Identity=36.4485981308411, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=39.4618834080717, Blast_Score=125, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23645; Mature: 23645

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQE
CCHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SQGKWPALKAERPDIVLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKR
HCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK
CEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH
LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR
HHHHHCHHHHHCCCCCCCHHHEEECCHHHHHCCHHHCCC
>Mature Secondary Structure
MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQE
CCHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SQGKWPALKAERPDIVLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKR
HCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK
CEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH
LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR
HHHHHCHHHHHCCCCCCCHHHEEECCHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]