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The map label for this gene is rimM [H]

Identifier: 209551324

GI number: 209551324

Start: 3878460

End: 3879029

Strand: Direct

Name: rimM [H]

Synonym: Rleg2_3753

Alternate gene names: 209551324

Gene position: 3878460-3879029 (Clockwise)

Preceding gene: 209551323

Following gene: 209551325

Centisome position: 85.47

GC content: 62.11

Gene sequence:

>570_bases
ATGACAAAGCTTGAAAACCCCGTTCTGATGGCGACGATCGGCGGCGCGCAAGGCCTCCGGGGAGAGGTGCGCGCCAAGGC
CTACACGGCCGATCCGAGCGCCCTTGGCGATTATGGCCACCTGCACAGCATGGACGGCCGCAGCTTCGAAGTCCTCGAAA
TCCGCGAGACGAAGAATGTCGTCATCGTTCGGTTCCGCGGCGTCAATGACCGCAATGCCGCCGAGGCGCTGAACGGGCTC
GAGCTCTATATCGAGCGCGACAACCTGCCCGACGAGGAGCTTGAAGATGACGAGTTCTACTATGCCGATCTCGAAGGTCT
CGAAGCACGCGACGACAAGGGTGCCAGCTATGGCACCGTCACCGGCGTCTTCGATTTCGGCGCCGGCGATTTGCTGGAAC
TCAAAGGTCCGGGCAAGCGCCCGGTGCTGATCCCCTTCTCCGAAGCCTCGGTGCTGGAGATCGACCTCGAGGCCGGAACG
CTGCTGATCGACCCGCTGGCGGCAGGGCTGGTCGACGACCCCGAAGAGCTCTCGAAATTCACCGCGGACAAGCCGAAAAA
GAAGAAGTGA

Upstream 100 bases:

>100_bases
GTCGAACGGGCGGCATGGCGACATGCCGCCCGTTTTCGTTTCCAATTATCCGCACTTCGTTTATGAGAAACCTGTCTTTC
GGCTTCACATGAAGGAACCC

Downstream 100 bases:

>100_bases
TGGCTTTCCGGGCGAGCGTGCTGACACTCTATCCGGAAATGTTTCCGGGGCATCTGGGCTTCTCGCTCGCCGGCAAGGCG
ATGGAGCGCGGGCAATGGTC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNVVIVRFRGVNDRNAAEALNGL
ELYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTVTGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGT
LLIDPLAAGLVDDPEELSKFTADKPKKKK

Sequences:

>Translated_189_residues
MTKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNVVIVRFRGVNDRNAAEALNGL
ELYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTVTGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGT
LLIDPLAAGLVDDPEELSKFTADKPKKKK
>Mature_188_residues
TKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNVVIVRFRGVNDRNAAEALNGLE
LYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTVTGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTL
LIDPLAAGLVDDPEELSKFTADKPKKKK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=168, Percent_Identity=25.5952380952381, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20615; Mature: 20484

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNV
CCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHCCCCCCEECCCCCCEEEEEEECCCCE
VIVRFRGVNDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTV
EEEEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEELSKF
EEEEECCCCCEEEECCCCCCCEEEEECCCEEEEEEECCCEEEECCHHCCCCCCHHHHHHH
TADKPKKKK
HCCCCCCCC
>Mature Secondary Structure 
TKLENPVLMATIGGAQGLRGEVRAKAYTADPSALGDYGHLHSMDGRSFEVLEIRETKNV
CCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHCCCCCCEECCCCCCEEEEEEECCCCE
VIVRFRGVNDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDKGASYGTV
EEEEEECCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
TGVFDFGAGDLLELKGPGKRPVLIPFSEASVLEIDLEAGTLLIDPLAAGLVDDPEELSKF
EEEEECCCCCEEEECCCCCCCEEEEECCCEEEEEEECCCEEEECCHHCCCCCCHHHHHHH
TADKPKKKK
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA