| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is xecD [H]
Identifier: 209551291
GI number: 209551291
Start: 3847362
End: 3848213
Strand: Direct
Name: xecD [H]
Synonym: Rleg2_3719
Alternate gene names: 209551291
Gene position: 3847362-3848213 (Clockwise)
Preceding gene: 209551289
Following gene: 209551292
Centisome position: 84.78
GC content: 63.62
Gene sequence:
>852_bases GTGACCAATATTCAAGACATTTTCAAGAAATCCAATGTTGCAGTCGTCACCGGCGGCGCGTCCGGCATCGGCCTGGCGGC GGCGAAATATTTCGCCGGGCGCGGCATGAGCGTCGCCATCGCCGATCTCGGCGGCGATCGGCTGGCCGAGGCCGCCGACG AACTCAAGGCCATTGCCGGCGAAGAAAATGTGATGGCGGTCGAGACCGACGTCGCCAACCGGGAATCCCTGGAGGCGCTC GAACGCGCCGTGCTCCAGCGTTTCGGCCGCGTGCACGTGCTGATGAACAATGCCGGCATCGGCCCGGAAACCTCGATCTT CAGCCCGCAGGCGAACTGGGACCATATCTTCGCCGTCAACCTGATGGGCGTCATCAACGGCACGCGCACCTTCGGCCCGA AGATGCTGTCGCACGGCGAGCCCGGCCTGATCATCAACACCGGCTCCAAGCAGGGCATCACCACGCCGCCCGGCAATCCC GCCTACAATATCTCCAAATCGGGGGTGAAGGTCTTTACCGAAGCGCTCGAGCACGAGCTTCGCAACATCGACGGCGGAAA GATCTCCGCCCATCTGCTGATCCCCGGATTCGTCTTCACCGGCCTCACCAAGGGGGACCGCGCGGAAAAGCCGGCCGGCG CCTGGACACCGGAGCAGACCGTCGATTTCATGGTCGAAAGTCTGGAGCGCGGCGACTTCTATATCCTCTGCCCCGACAAC GACGTGGCCCGGCCGGTCGACGAACGCCGCATGGCCTGGGCTGCCGGCGACGTCATCGAGAATCGCCCGCCGCTGTCACG CTGGCACAAGGACTACGGCGACAAGTTCAGAGCGTTCCTGGAACAGAAGTGA
Upstream 100 bases:
>100_bases GCAAGGGCAAGTGCTAAGCCGCCGGCGCGATAGCGTTGACAGCGCCAAAGCGGAGCCCATATTCGCCAACGTCCTAGCAA TGATCGAGGAGGGGCTCCCC
Downstream 100 bases:
>100_bases TCGTTACTATTCCAAGGTTTGATTGGTAATTTTCTGGAAGCCGAGTAAGAAATCGTCGGATCTTTCCGGCTTTCAGAGTG TGCCATGGATTTCCTGCCCA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: R-HPCDH; Aliphatic epoxide carboxylation component III [H]
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MTNIQDIFKKSNVAVVTGGASGIGLAAAKYFAGRGMSVAIADLGGDRLAEAADELKAIAGEENVMAVETDVANRESLEAL ERAVLQRFGRVHVLMNNAGIGPETSIFSPQANWDHIFAVNLMGVINGTRTFGPKMLSHGEPGLIINTGSKQGITTPPGNP AYNISKSGVKVFTEALEHELRNIDGGKISAHLLIPGFVFTGLTKGDRAEKPAGAWTPEQTVDFMVESLERGDFYILCPDN DVARPVDERRMAWAAGDVIENRPPLSRWHKDYGDKFRAFLEQK
Sequences:
>Translated_283_residues MTNIQDIFKKSNVAVVTGGASGIGLAAAKYFAGRGMSVAIADLGGDRLAEAADELKAIAGEENVMAVETDVANRESLEAL ERAVLQRFGRVHVLMNNAGIGPETSIFSPQANWDHIFAVNLMGVINGTRTFGPKMLSHGEPGLIINTGSKQGITTPPGNP AYNISKSGVKVFTEALEHELRNIDGGKISAHLLIPGFVFTGLTKGDRAEKPAGAWTPEQTVDFMVESLERGDFYILCPDN DVARPVDERRMAWAAGDVIENRPPLSRWHKDYGDKFRAFLEQK >Mature_282_residues TNIQDIFKKSNVAVVTGGASGIGLAAAKYFAGRGMSVAIADLGGDRLAEAADELKAIAGEENVMAVETDVANRESLEALE RAVLQRFGRVHVLMNNAGIGPETSIFSPQANWDHIFAVNLMGVINGTRTFGPKMLSHGEPGLIINTGSKQGITTPPGNPA YNISKSGVKVFTEALEHELRNIDGGKISAHLLIPGFVFTGLTKGDRAEKPAGAWTPEQTVDFMVESLERGDFYILCPDND VARPVDERRMAWAAGDVIENRPPLSRWHKDYGDKFRAFLEQK
Specific function: Catalyzes the oxidation of 2-(R)-hydroxyalkyl thioesters of CoM to 2-oxoalkyl thioesters of CoM. The enzyme highly specific for the R enantiomers [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI31542939, Length=212, Percent_Identity=34.4339622641509, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=35.2941176470588, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI25282469, Length=242, Percent_Identity=27.6859504132231, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI15277342, Length=236, Percent_Identity=30.5084745762712, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=27.8606965174129, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI142976729, Length=246, Percent_Identity=26.0162601626016, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4758504, Length=231, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI83715985, Length=186, Percent_Identity=31.1827956989247, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI109715829, Length=232, Percent_Identity=27.1551724137931, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=30.8016877637131, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7706318, Length=206, Percent_Identity=26.2135922330097, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI19923817, Length=144, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4504505, Length=179, Percent_Identity=35.7541899441341, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1789057, Length=187, Percent_Identity=32.620320855615, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787905, Length=139, Percent_Identity=27.3381294964029, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786701, Length=231, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=27.1551724137931, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87082100, Length=214, Percent_Identity=26.1682242990654, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789208, Length=215, Percent_Identity=26.5116279069767, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787335, Length=203, Percent_Identity=29.064039408867, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87082160, Length=205, Percent_Identity=28.780487804878, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790717, Length=211, Percent_Identity=27.0142180094787, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=29.4685990338164, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17562908, Length=246, Percent_Identity=31.3008130081301, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561402, Length=205, Percent_Identity=29.7560975609756, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25147288, Length=194, Percent_Identity=32.4742268041237, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994604, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193204405, Length=249, Percent_Identity=29.718875502008, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=30.8080808080808, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555706, Length=217, Percent_Identity=29.4930875576037, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=31.4720812182741, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567345, Length=238, Percent_Identity=27.3109243697479, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17538486, Length=203, Percent_Identity=30.5418719211823, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17562906, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17538182, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=27.6381909547739, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560332, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562990, Length=193, Percent_Identity=29.5336787564767, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17508895, Length=239, Percent_Identity=23.4309623430962, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17565030, Length=207, Percent_Identity=29.4685990338164, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17531453, Length=250, Percent_Identity=28.4, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=180, Percent_Identity=32.2222222222222, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331218, Length=174, Percent_Identity=35.0574712643678, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24665243, Length=174, Percent_Identity=35.0574712643678, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24644339, Length=191, Percent_Identity=30.8900523560209, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21355631, Length=174, Percent_Identity=32.183908045977, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=31.6326530612245, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI21357041, Length=172, Percent_Identity=32.5581395348837, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI221331216, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24665247, Length=175, Percent_Identity=34.8571428571429, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24639444, Length=194, Percent_Identity=30.4123711340206, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17737361, Length=231, Percent_Identity=29.004329004329, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=234, Percent_Identity=28.6324786324786, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=31.6062176165803, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21358495, Length=240, Percent_Identity=25.4166666666667, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007234, Length=202, Percent_Identity=30.6930693069307, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007232, Length=183, Percent_Identity=31.1475409836066, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI18859837, Length=163, Percent_Identity=34.9693251533742, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.268 [H]
Molecular weight: Translated: 30607; Mature: 30476
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNIQDIFKKSNVAVVTGGASGIGLAAAKYFAGRGMSVAIADLGGDRLAEAADELKAIAG CCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC EENVMAVETDVANRESLEALERAVLQRFGRVHVLMNNAGIGPETSIFSPQANWDHIFAVN CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCEEEEEE LMGVINGTRTFGPKMLSHGEPGLIINTGSKQGITTPPGNPAYNISKSGVKVFTEALEHEL EHHHHCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RNIDGGKISAHLLIPGFVFTGLTKGDRAEKPAGAWTPEQTVDFMVESLERGDFYILCPDN HCCCCCEEEEEEEECHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC DVARPVDERRMAWAAGDVIENRPPLSRWHKDYGDKFRAFLEQK CCCCCHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TNIQDIFKKSNVAVVTGGASGIGLAAAKYFAGRGMSVAIADLGGDRLAEAADELKAIAG CCHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC EENVMAVETDVANRESLEALERAVLQRFGRVHVLMNNAGIGPETSIFSPQANWDHIFAVN CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCEEEEEE LMGVINGTRTFGPKMLSHGEPGLIINTGSKQGITTPPGNPAYNISKSGVKVFTEALEHEL EHHHHCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RNIDGGKISAHLLIPGFVFTGLTKGDRAEKPAGAWTPEQTVDFMVESLERGDFYILCPDN HCCCCCEEEEEEEECHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC DVARPVDERRMAWAAGDVIENRPPLSRWHKDYGDKFRAFLEQK CCCCCHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7704278; 9405410; 12524213 [H]