Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 209551096

GI number: 209551096

Start: 3646245

End: 3648167

Strand: Direct

Name: yebA [H]

Synonym: Rleg2_3520

Alternate gene names: 209551096

Gene position: 3646245-3648167 (Clockwise)

Preceding gene: 209551090

Following gene: 209551103

Centisome position: 80.35

GC content: 63.08

Gene sequence:

>1923_bases
ATGATCCGCTCGTTGGGCAACGAGCCTCCGCTTCTGGCCGACGGCAGGCGCGCGCCCGACCGCCGCGAAGTGTCTCTCCG
CTGGCTCTCGGGTACGTTCCTCACCGGCATTACATCCTCGGTCCTGATGGGCGTCGCGCTTTTTGCCGCCCTTGACGGCC
GCCAGCAACTGGCAATCCCCGCCGAAGCCTATGCAAGTGCTGCGGCAGACGCGCACGAAGATACGACAGTGGTGCGCGGC
GGAAGGCTGATCGCGCCTGCCATCGCCGCAAAACCGTCCGACCGGGCCATCATGGAAGTTTCCACAGTCGTCCACGACGG
TGAAAAGGAAGTCGTGCGCCGCCAGCCCTTCGCACATGTGAAGATGACGCTGGCCGCCAACCATGTGGCGACCGAGGACT
ATCCAGACTTCGATCCCCTGGCGATCTTTTCCGCCGACGAGCCGCAGCCCGCCCCGCAAAGCCGCACCGGCGCGATTTAC
GGCTCCGATGTCGAATCCGAAGTCAGCCTGAAGACCGTTTCCTTCCCGACCGGCAAGACCAGCATGAAGATGGCCTCCGG
CCTGTCGCTCGAGGAGGTTGAAGAGAATGTGCGCTCCAACGGCTCGGTGCTGACGGATGGCAACACCCAGCTTGCAGCCC
TCTATTACGTCGATCCGCGCCGTTTCTCCAACGAGGATGCCGATGTCGATCTGACCGCCGGCCTCTCCGCGCGTGTGCTC
GAACAGAACATGACCGTTTCCGCATCGGAATCGATCACGCCGCAGACCGAGGAATTCGCCGACGACATCCTGCCGGTCCG
CGTCGACACGCCGATCGCTAAGGCGCTGACGGATTCAGGCTATCCGCAGCAATATGCCGATGGCATTGCCGGTTTCATCT
CGCAGCAACTGGGTTCCACCGATCTCGACAAGGGCGACGTGCTGCGCATCGGCATCATTCAGAAGGGCGAACAGGCAAAG
ATCATCCGGGCCAGCGTCTATCGCAGCACCCGCCATCTCGTCACCGTCGCCGTCGACGACAAGGGCAGATACGTGCCCGG
CAGCGAGCCGCCGATGCTGGATGCCATCGCCACCGCCTTCGATGACAATTCCTTCGCGCCGCCGCCGGGCCAGAACCTGC
CGCGCGTCTATGACGGCATCTATCGCGCTGCCCTTTCCTACGGCATGACCAAGGACATGACGGCGCTGATCATCAAGCTG
CTCGCCAGCAATGTCGATTTCCAGGCGCAGTTGAGGCCGACCGACAGTCTCGAAGCCTTCTTCTCCGTCGCCGACAGCGC
CGGCCAGGCGACCGAGGATTCCGAGCTGCTCTACGTCAACGCCCGTTTCGGCGATACGCAGACACGCTTCTACCGCTTCC
AGGATCCGGAGGACGGCACGGTCGATTATTTCGACGAGAACGGTAAAAGCATCCGCCAGTTCCTGCTGCGCAACCCGGTC
CCGAACGGCATTTTCAAATCGGGCTTCGGCATGCGCCGTCACCCGATCCTCGGTTTCGCCCGCATGCACACCGGCGTCGA
TTGGGCGGCACCCCGCGGCACCGCAATCATCGCCGCCGGCAACGGCACTGTGGAAAAAGCCGGCTGGGATTCTGGCGGTT
ATGGCAACCAGACGATTATCCGGCACGCCAACGGCTATGAATCCTCCTACAATCACCAGAGCGCCATCGCCAAAGGCGTT
ACCCCCGGCGCCAAGATCCGCCAGGGCCAGGTGATCGGCTGGGTCGGCACGACGGGCGAGTCCACCGGGCCGCACCTGCA
TTACGAGCTGATCGTCAACGGCACAAAGGTCGATCCCCTGCGCATCCGCCTGCCGGGCGGCAAATCGCTGCAAGGCGAGG
CGCTGGCGAAATTCGAGGACGAGCGCAAGCGTATCGATACGCTGCTGAACAACCAGACGTCCGACCAGGTGGCGAGCAAA
TAA

Upstream 100 bases:

>100_bases
ATATGCACATCTTTCGCCCCAGCCAGGATGGCCGAGAAATGCTTCCAGAGACGTCGAATGTAAGGACGCGGACCCGACTG
CCATGATGACGGAGAAAATG

Downstream 100 bases:

>100_bases
TCCCTAACCTTTGCGTAATTTCGTCCCCGCCAGACAAAAATGGCGGCCGAAGCCGCCATTTCTCATTCATCGGGCAAAAT
CCGCCTATGCCGCTTCGCTC

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MIRSLGNEPPLLADGRRAPDRREVSLRWLSGTFLTGITSSVLMGVALFAALDGRQQLAIPAEAYASAAADAHEDTTVVRG
GRLIAPAIAAKPSDRAIMEVSTVVHDGEKEVVRRQPFAHVKMTLAANHVATEDYPDFDPLAIFSADEPQPAPQSRTGAIY
GSDVESEVSLKTVSFPTGKTSMKMASGLSLEEVEENVRSNGSVLTDGNTQLAALYYVDPRRFSNEDADVDLTAGLSARVL
EQNMTVSASESITPQTEEFADDILPVRVDTPIAKALTDSGYPQQYADGIAGFISQQLGSTDLDKGDVLRIGIIQKGEQAK
IIRASVYRSTRHLVTVAVDDKGRYVPGSEPPMLDAIATAFDDNSFAPPPGQNLPRVYDGIYRAALSYGMTKDMTALIIKL
LASNVDFQAQLRPTDSLEAFFSVADSAGQATEDSELLYVNARFGDTQTRFYRFQDPEDGTVDYFDENGKSIRQFLLRNPV
PNGIFKSGFGMRRHPILGFARMHTGVDWAAPRGTAIIAAGNGTVEKAGWDSGGYGNQTIIRHANGYESSYNHQSAIAKGV
TPGAKIRQGQVIGWVGTTGESTGPHLHYELIVNGTKVDPLRIRLPGGKSLQGEALAKFEDERKRIDTLLNNQTSDQVASK

Sequences:

>Translated_640_residues
MIRSLGNEPPLLADGRRAPDRREVSLRWLSGTFLTGITSSVLMGVALFAALDGRQQLAIPAEAYASAAADAHEDTTVVRG
GRLIAPAIAAKPSDRAIMEVSTVVHDGEKEVVRRQPFAHVKMTLAANHVATEDYPDFDPLAIFSADEPQPAPQSRTGAIY
GSDVESEVSLKTVSFPTGKTSMKMASGLSLEEVEENVRSNGSVLTDGNTQLAALYYVDPRRFSNEDADVDLTAGLSARVL
EQNMTVSASESITPQTEEFADDILPVRVDTPIAKALTDSGYPQQYADGIAGFISQQLGSTDLDKGDVLRIGIIQKGEQAK
IIRASVYRSTRHLVTVAVDDKGRYVPGSEPPMLDAIATAFDDNSFAPPPGQNLPRVYDGIYRAALSYGMTKDMTALIIKL
LASNVDFQAQLRPTDSLEAFFSVADSAGQATEDSELLYVNARFGDTQTRFYRFQDPEDGTVDYFDENGKSIRQFLLRNPV
PNGIFKSGFGMRRHPILGFARMHTGVDWAAPRGTAIIAAGNGTVEKAGWDSGGYGNQTIIRHANGYESSYNHQSAIAKGV
TPGAKIRQGQVIGWVGTTGESTGPHLHYELIVNGTKVDPLRIRLPGGKSLQGEALAKFEDERKRIDTLLNNQTSDQVASK
>Mature_640_residues
MIRSLGNEPPLLADGRRAPDRREVSLRWLSGTFLTGITSSVLMGVALFAALDGRQQLAIPAEAYASAAADAHEDTTVVRG
GRLIAPAIAAKPSDRAIMEVSTVVHDGEKEVVRRQPFAHVKMTLAANHVATEDYPDFDPLAIFSADEPQPAPQSRTGAIY
GSDVESEVSLKTVSFPTGKTSMKMASGLSLEEVEENVRSNGSVLTDGNTQLAALYYVDPRRFSNEDADVDLTAGLSARVL
EQNMTVSASESITPQTEEFADDILPVRVDTPIAKALTDSGYPQQYADGIAGFISQQLGSTDLDKGDVLRIGIIQKGEQAK
IIRASVYRSTRHLVTVAVDDKGRYVPGSEPPMLDAIATAFDDNSFAPPPGQNLPRVYDGIYRAALSYGMTKDMTALIIKL
LASNVDFQAQLRPTDSLEAFFSVADSAGQATEDSELLYVNARFGDTQTRFYRFQDPEDGTVDYFDENGKSIRQFLLRNPV
PNGIFKSGFGMRRHPILGFARMHTGVDWAAPRGTAIIAAGNGTVEKAGWDSGGYGNQTIIRHANGYESSYNHQSAIAKGV
TPGAKIRQGQVIGWVGTTGESTGPHLHYELIVNGTKVDPLRIRLPGGKSLQGEALAKFEDERKRIDTLLNNQTSDQVASK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=245, Percent_Identity=34.2857142857143, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082174, Length=103, Percent_Identity=37.8640776699029, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=39.3939393939394, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 69171; Mature: 69171

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSLGNEPPLLADGRRAPDRREVSLRWLSGTFLTGITSSVLMGVALFAALDGRQQLAIP
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEECC
AEAYASAAADAHEDTTVVRGGRLIAPAIAAKPSDRAIMEVSTVVHDGEKEVVRRQPFAHV
HHHHHHHHCCCCCCCEEEECCEEEEHHHHCCCCCCHHEEEHHHHHCCHHHHHHCCCCCEE
KMTLAANHVATEDYPDFDPLAIFSADEPQPAPQSRTGAIYGSDVESEVSLKTVSFPTGKT
EEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCC
SMKMASGLSLEEVEENVRSNGSVLTDGNTQLAALYYVDPRRFSNEDADVDLTAGLSARVL
HHHHHCCCCHHHHHHHHHCCCCEEECCCCEEEEEEEECCHHCCCCCCCEEEECCCHHHHH
EQNMTVSASESITPQTEEFADDILPVRVDTPIAKALTDSGYPQQYADGIAGFISQQLGST
HCCCEEECCCCCCCCHHHHHHCCEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
DLDKGDVLRIGIIQKGEQAKIIRASVYRSTRHLVTVAVDDKGRYVPGSEPPMLDAIATAF
CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC
DDNSFAPPPGQNLPRVYDGIYRAALSYGMTKDMTALIIKLLASNVDFQAQLRPTDSLEAF
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
FSVADSAGQATEDSELLYVNARFGDTQTRFYRFQDPEDGTVDYFDENGKSIRQFLLRNPV
HHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHCCC
PNGIFKSGFGMRRHPILGFARMHTGVDWAAPRGTAIIAAGNGTVEKAGWDSGGYGNQTII
CCCHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCEEE
RHANGYESSYNHQSAIAKGVTPGAKIRQGQVIGWVGTTGESTGPHLHYELIVNGTKVDPL
EECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEECEE
RIRLPGGKSLQGEALAKFEDERKRIDTLLNNQTSDQVASK
EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MIRSLGNEPPLLADGRRAPDRREVSLRWLSGTFLTGITSSVLMGVALFAALDGRQQLAIP
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEECC
AEAYASAAADAHEDTTVVRGGRLIAPAIAAKPSDRAIMEVSTVVHDGEKEVVRRQPFAHV
HHHHHHHHCCCCCCCEEEECCEEEEHHHHCCCCCCHHEEEHHHHHCCHHHHHHCCCCCEE
KMTLAANHVATEDYPDFDPLAIFSADEPQPAPQSRTGAIYGSDVESEVSLKTVSFPTGKT
EEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCC
SMKMASGLSLEEVEENVRSNGSVLTDGNTQLAALYYVDPRRFSNEDADVDLTAGLSARVL
HHHHHCCCCHHHHHHHHHCCCCEEECCCCEEEEEEEECCHHCCCCCCCEEEECCCHHHHH
EQNMTVSASESITPQTEEFADDILPVRVDTPIAKALTDSGYPQQYADGIAGFISQQLGST
HCCCEEECCCCCCCCHHHHHHCCEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
DLDKGDVLRIGIIQKGEQAKIIRASVYRSTRHLVTVAVDDKGRYVPGSEPPMLDAIATAF
CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHC
DDNSFAPPPGQNLPRVYDGIYRAALSYGMTKDMTALIIKLLASNVDFQAQLRPTDSLEAF
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
FSVADSAGQATEDSELLYVNARFGDTQTRFYRFQDPEDGTVDYFDENGKSIRQFLLRNPV
HHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEECCCCHHHHHHHHHCCC
PNGIFKSGFGMRRHPILGFARMHTGVDWAAPRGTAIIAAGNGTVEKAGWDSGGYGNQTII
CCCHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCEEE
RHANGYESSYNHQSAIAKGVTPGAKIRQGQVIGWVGTTGESTGPHLHYELIVNGTKVDPL
EECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEECEE
RIRLPGGKSLQGEALAKFEDERKRIDTLLNNQTSDQVASK
EEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]