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The map label for this gene is ycjO [C]

Identifier: 209551025

GI number: 209551025

Start: 3564377

End: 3565249

Strand: Reverse

Name: ycjO [C]

Synonym: Rleg2_3449

Alternate gene names: 209551025

Gene position: 3565249-3564377 (Counterclockwise)

Preceding gene: 209551026

Following gene: 209551024

Centisome position: 78.57

GC content: 59.79

Gene sequence:

>873_bases
ATGGCAACCTTGCATACCCGCTCCGCAGCGCGCCTGATGATTGCGCCCTCCGTGCTGCTCCTCTTTGCATGGATGATCGT
CCCACTTGCGATGACGATCTATTTTTCGCTGCTGAACTACAATCTGCTCAGCCCCGGCATGGAGAGCTTCGTCGGCTTTC
TGAACTACGAATATTTCCTGTCCGATCCTGCCTTCTTCGCGGCGCTGGTCAATACGCTGGTGCTCGTCGCCGGCGTTCTG
TTGATCACCGTCATCGGCGGCATCGCCTTTGCACTGCTGCTCGACCAGCCGATGTACGGCCAGGGTATCGTGCGCATCCT
GGTGATTGCGCCGTTCTTCGTCATGCCGACGGTGGCCGCGCTGGTGTGGAAGAACATGTTCATGAACCCGGTCAACGGCC
TGTTTGCGCATCTTGCCAAGGCGCTCGGCCTGCAGCCGATCGACTGGCTGGCGAATGCGCCGCTGTTCTCCGTCATTCTC
ATCGTCGCCTGGCAATGGCTGCCCTTTGCCACCCTCATCATGCTCACGGCGCTGCAGTCGCTTGACGAGGAGCAGAAGGA
AGCCTCCGAAATGGACGGCGCCGGGCCGATCTCGAAATTCATCTACATCATCCTGCCGCATATGGCCCGCGCCATCACCG
TGGTGATCCTGATCCAGACGATCTTCCTGCTTTCGGTCTTTGCCGAAATTCTCGTCACCACCAATGGCGGGCCGGGCACC
GACAGCACCAACCTCACCTACCTCGTCTATGCCCAGGCACTGCTGCAGTTTGATATCGGCGGCGCTTCGGCGGGCGGTAT
CGTCGCCGTCGTGCTTGCCAATATCGTCGCGATCTTCCTCGTCCGCCTCGTCGGCAAGAATCTGGAGGCTTGA

Upstream 100 bases:

>100_bases
CCCTCTGGGCCGCCGATTGCCCGAACTGCATCGGCGGCCGCTTTTTCAGACAAAGCTTTCCTGCGGCCGCTCCCCGCTTC
AGATCAGATCGGTGATTGCC

Downstream 100 bases:

>100_bases
GATGGCCAGAAAAGTCACAACCCGGCGCAAGGTCATCGTCACCGCGATCGCCTGGACGCTCGGCATCCTGATCTTCTTCC
CGATCCTCTGGACCTTCCTG

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MATLHTRSAARLMIAPSVLLLFAWMIVPLAMTIYFSLLNYNLLSPGMESFVGFLNYEYFLSDPAFFAALVNTLVLVAGVL
LITVIGGIAFALLLDQPMYGQGIVRILVIAPFFVMPTVAALVWKNMFMNPVNGLFAHLAKALGLQPIDWLANAPLFSVIL
IVAWQWLPFATLIMLTALQSLDEEQKEASEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSVFAEILVTTNGGPGT
DSTNLTYLVYAQALLQFDIGGASAGGIVAVVLANIVAIFLVRLVGKNLEA

Sequences:

>Translated_290_residues
MATLHTRSAARLMIAPSVLLLFAWMIVPLAMTIYFSLLNYNLLSPGMESFVGFLNYEYFLSDPAFFAALVNTLVLVAGVL
LITVIGGIAFALLLDQPMYGQGIVRILVIAPFFVMPTVAALVWKNMFMNPVNGLFAHLAKALGLQPIDWLANAPLFSVIL
IVAWQWLPFATLIMLTALQSLDEEQKEASEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSVFAEILVTTNGGPGT
DSTNLTYLVYAQALLQFDIGGASAGGIVAVVLANIVAIFLVRLVGKNLEA
>Mature_289_residues
ATLHTRSAARLMIAPSVLLLFAWMIVPLAMTIYFSLLNYNLLSPGMESFVGFLNYEYFLSDPAFFAALVNTLVLVAGVLL
ITVIGGIAFALLLDQPMYGQGIVRILVIAPFFVMPTVAALVWKNMFMNPVNGLFAHLAKALGLQPIDWLANAPLFSVILI
VAWQWLPFATLIMLTALQSLDEEQKEASEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSVFAEILVTTNGGPGTD
STNLTYLVYAQALLQFDIGGASAGGIVAVVLANIVAIFLVRLVGKNLEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=233, Percent_Identity=31.3304721030043, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789861, Length=296, Percent_Identity=26.0135135135135, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790465, Length=243, Percent_Identity=28.3950617283951, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31408; Mature: 31277

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATLHTRSAARLMIAPSVLLLFAWMIVPLAMTIYFSLLNYNLLSPGMESFVGFLNYEYFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SDPAFFAALVNTLVLVAGVLLITVIGGIAFALLLDQPMYGQGIVRILVIAPFFVMPTVAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMNPVNGLFAHLAKALGLQPIDWLANAPLFSVILIVAWQWLPFATLIMLTALQS
HHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEEQKEASEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSVFAEILVTTNGGPGT
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DSTNLTYLVYAQALLQFDIGGASAGGIVAVVLANIVAIFLVRLVGKNLEA
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]