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The map label for this gene is deoR [H]

Identifier: 209551014

GI number: 209551014

Start: 3553388

End: 3554365

Strand: Direct

Name: deoR [H]

Synonym: Rleg2_3438

Alternate gene names: 209551014

Gene position: 3553388-3554365 (Clockwise)

Preceding gene: 209551011

Following gene: 209551017

Centisome position: 78.3

GC content: 62.07

Gene sequence:

>978_bases
GTGGTCAAGCTTAAACGCGGCACGCACACGGCCTTTTCGGAAGCATCCTCGCTGCGGCTGAGGGCTGCGTGGCTCTACTA
TAATGAGGGCCTGACCCAGAAGGACGTCGCAGAACAGCTCGGCATCAGCCGTACCACCGTCATCCGTCTGCTCGATGAGG
CGATGAAGCGCAGCGAAGTCCAGATCTGGATCAACGATTCGATCGGCGATTGCGTCGAACTTGCGGTAAAGTTGGAGCGC
GCCTACGGCCTCGACGAGGCGATCGTCGTACCATCACCCATCGGCAGCGACGTCAATTCGCTGGCAAAGAATGTCGGCCT
GGCGCTTGGCCAGTTCCTCTCCGAAGCCATCCCGGACGATTATACGATCGGCGTCGGCTGGGGCCGGACCATGACCGCCT
CGCTGTCGAGCTTCCGGCCGCCGCGCCGCGCCAATTGCAAGGTCGTCTCGCTGCTCGGCGGCATCGTCGCCGTGCACCAG
ACGAACCCGATCGATTACACATGGCGGCTGGCCAATCAGCTCGGCGCCGAATGTTATATGTTCCTGGCGCCACTCCTCGT
CGATTCCGTCGAGACCAAGCGCAATCTGATCGAGAAATGCGGGCTGGACACGATTTACCGTCTGGCCGAGAGCCTTGATC
TGGCGATCGTCAGCTGCGGCGATATCGGCCCGCATTCGACCTCGCTGTCGGAGGGCTGGATCTCGAAAGCCGAGCTGCGG
GAGCTGATCGCTGCCGGCTGCGTCTGCGACACCATGTTCAACTTCCTCGACAAGGACGGCAATTCGGTCGACCACTCGAT
CAATCGGCGCGTCATGTCCGTCGATCTCGACACGCTGAAGGAGGCCAAGCATATCGTGCTCTCCTCCGGCGGCGCCCACC
GCGCCGTCGCCATCCGCGCCACGATCAAGCGCATCGGCTGCAATACGCTGATCACCGATGAAAGTGCGGCACGGGCGCTG
CTGGAACTGGCAGAGTGA

Upstream 100 bases:

>100_bases
ATTGACATAAGTGTCACACCCGTCATTATCCAGGCACAAGCGTATCGCTGCGACCTTTCATCTCATCAGGGATTCAGGGC
AGGAATTGTGCGGAGGAGAT

Downstream 100 bases:

>100_bases
CATCTCCCGTCCCTCTTCTCCCCAGCGGGGAGAAGTGCCGGAGCGTTAGCGAGGCGATGAGGGGGCGAGCGACGCGAGGA
GCGAACGGTCGGAGCGATAA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVKLKRGTHTAFSEASSLRLRAAWLYYNEGLTQKDVAEQLGISRTTVIRLLDEAMKRSEVQIWINDSIGDCVELAVKLER
AYGLDEAIVVPSPIGSDVNSLAKNVGLALGQFLSEAIPDDYTIGVGWGRTMTASLSSFRPPRRANCKVVSLLGGIVAVHQ
TNPIDYTWRLANQLGAECYMFLAPLLVDSVETKRNLIEKCGLDTIYRLAESLDLAIVSCGDIGPHSTSLSEGWISKAELR
ELIAAGCVCDTMFNFLDKDGNSVDHSINRRVMSVDLDTLKEAKHIVLSSGGAHRAVAIRATIKRIGCNTLITDESAARAL
LELAE

Sequences:

>Translated_325_residues
MVKLKRGTHTAFSEASSLRLRAAWLYYNEGLTQKDVAEQLGISRTTVIRLLDEAMKRSEVQIWINDSIGDCVELAVKLER
AYGLDEAIVVPSPIGSDVNSLAKNVGLALGQFLSEAIPDDYTIGVGWGRTMTASLSSFRPPRRANCKVVSLLGGIVAVHQ
TNPIDYTWRLANQLGAECYMFLAPLLVDSVETKRNLIEKCGLDTIYRLAESLDLAIVSCGDIGPHSTSLSEGWISKAELR
ELIAAGCVCDTMFNFLDKDGNSVDHSINRRVMSVDLDTLKEAKHIVLSSGGAHRAVAIRATIKRIGCNTLITDESAARAL
LELAE
>Mature_325_residues
MVKLKRGTHTAFSEASSLRLRAAWLYYNEGLTQKDVAEQLGISRTTVIRLLDEAMKRSEVQIWINDSIGDCVELAVKLER
AYGLDEAIVVPSPIGSDVNSLAKNVGLALGQFLSEAIPDDYTIGVGWGRTMTASLSSFRPPRRANCKVVSLLGGIVAVHQ
TNPIDYTWRLANQLGAECYMFLAPLLVDSVETKRNLIEKCGLDTIYRLAESLDLAIVSCGDIGPHSTSLSEGWISKAELR
ELIAAGCVCDTMFNFLDKDGNSVDHSINRRVMSVDLDTLKEAKHIVLSSGGAHRAVAIRATIKRIGCNTLITDESAARAL
LELAE

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=309, Percent_Identity=28.8025889967638, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=25.2396166134185, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35436; Mature: 35436

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKLKRGTHTAFSEASSLRLRAAWLYYNEGLTQKDVAEQLGISRTTVIRLLDEAMKRSEV
CCEECCCCCHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
QIWINDSIGDCVELAVKLERAYGLDEAIVVPSPIGSDVNSLAKNVGLALGQFLSEAIPDD
EEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
YTIGVGWGRTMTASLSSFRPPRRANCKVVSLLGGIVAVHQTNPIDYTWRLANQLGAECYM
EEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
FLAPLLVDSVETKRNLIEKCGLDTIYRLAESLDLAIVSCGDIGPHSTSLSEGWISKAELR
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHCCCHHHHH
ELIAAGCVCDTMFNFLDKDGNSVDHSINRRVMSVDLDTLKEAKHIVLSSGGAHRAVAIRA
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECHHHHHHHHHEEEECCCCCCEEHHHH
TIKRIGCNTLITDESAARALLELAE
HHHHHCCCCEECCHHHHHHHHHHCC
>Mature Secondary Structure
MVKLKRGTHTAFSEASSLRLRAAWLYYNEGLTQKDVAEQLGISRTTVIRLLDEAMKRSEV
CCEECCCCCHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
QIWINDSIGDCVELAVKLERAYGLDEAIVVPSPIGSDVNSLAKNVGLALGQFLSEAIPDD
EEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
YTIGVGWGRTMTASLSSFRPPRRANCKVVSLLGGIVAVHQTNPIDYTWRLANQLGAECYM
EEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHH
FLAPLLVDSVETKRNLIEKCGLDTIYRLAESLDLAIVSCGDIGPHSTSLSEGWISKAELR
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHCCCHHHHH
ELIAAGCVCDTMFNFLDKDGNSVDHSINRRVMSVDLDTLKEAKHIVLSSGGAHRAVAIRA
HHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECHHHHHHHHHEEEECCCCCCEEHHHH
TIKRIGCNTLITDESAARALLELAE
HHHHHCCCCEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]