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The map label for this gene is soxB [H]

Identifier: 209550934

GI number: 209550934

Start: 3466614

End: 3467867

Strand: Reverse

Name: soxB [H]

Synonym: Rleg2_3358

Alternate gene names: 209550934

Gene position: 3467867-3466614 (Counterclockwise)

Preceding gene: 209550936

Following gene: 209550933

Centisome position: 76.42

GC content: 63.16

Gene sequence:

>1254_bases
ATGCGGAAATATTCGGTTTTTGCCGTGGCGAGGGAGGCCCTTCGGGGCCATAAGGGCTGGGAGAAGCAGTGGACTTCGCC
TGAGCCGCGCGCCGAATACGACGTCGTCATCATCGGCGCCGGTGGTCATGGGCTGGGTGCAGCCTATTACCTTGCCAAGG
AGCACGGCATCACCAATGTGGCGGTGATCGAAAAAGGCTGGCTCGGCGGCGGCAATACCGGCCGCAACACCACCATCATC
CGCTCGAACTACCTCTACGAAGAGAGCATGCAGATCTACGAGCATTCGATGAAGCTCTGGGAAGGGCTTTCGCAGGAGCT
CAACTACAATGTGATGTATTCGCCGCGCGGCGTGATGATGCTCTCGCACAATATTCACGACCAGCAGTCGTTCAAGCGGC
ATATCCATGCCAACCGGCTCTACGGTATCGACAATGAATGGCTGACGCCGGAGCAGGCCAAGGCCTATTGCCCGCCGCTC
GACATTTCGGCCAGTGCCCGCTACCCGATCAACGGTGCGGCGCTGCAGCGGCGCGGCGGCACGGCGCGGCACGATGCGGT
TGCCTGGGGTTATGCGCGTGCGGCCTCGGACCGCGGCGTGCACATCATCCAGAATTGCGAAGTGACCGGTATCCGCCGCG
GCCCCGATGGACGCGTGACCGGAGTCGAGACCTCGCGCGGCTTCATCGGCGCCAAAAAGGTCGCCGTGTCGGCCGCCGGC
CATACGACGACGATCATGAAGATGGCCGATGTGCGCGTGCCGCTGCAATCGAGCCCGCTGCAGGCGCTGGTCTCCGAGCC
GCTGAAGCCGATCTTCCCGTGCGTCGTCATGTCGAACACGGTGCATGCCTATATCTCCCAGTCCGACAAGGGAGAGCTCG
TCATCGGCGCCGGCACCGACCAGTATAATTCCTACTCGCAGACCGGCGGGCTGCAGATCATTACCCATACGCTCGACGCT
ATCTGCGAGCTTTTCCCGATGTTCCGGCGCGTCAAGATGATGCGGCAATGGGGCGGCATCGTCGACAATACGCCGGACCG
CTCGGCGATCCAGTCGAAGACGCCGGTTCCCGGGCTTTACGTCAATTGCGGCTGGGGCACCGGCGGCTTCAAGGCGACGC
CGGGCTCGGCCAATCTCTTCGCGCATCTGATTGCCCGCGACGAGCCGCACAAGTTCAATGCCGGGCTGACGCTGGAACGT
TTCCGCAGTGGCCGGCTGATCGACGAGGCGGCGGCGGCAGCGGTGGCACACTGA

Upstream 100 bases:

>100_bases
CAAAGCGCTAGACTGTCGCAAAAGAACCGTTGTGCCGCATTTGGATTTGCGATTTGTATGGGCGCGGAGAACAGCCCTTT
CCCATAGGAGAACAAGGCGG

Downstream 100 bases:

>100_bases
TGATGAATGCTATCTGGACGTTCGCTCCTTTCATCGTTCACCCCCTCATCCGCCTTTCAGGCACCTTCTCCCCAATGGGG
AGAAGGGAAGGAGAAGGAAA

Product: sarcosine oxidase subunit beta family

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRKYSVFAVAREALRGHKGWEKQWTSPEPRAEYDVVIIGAGGHGLGAAYYLAKEHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLYEESMQIYEHSMKLWEGLSQELNYNVMYSPRGVMMLSHNIHDQQSFKRHIHANRLYGIDNEWLTPEQAKAYCPPL
DISASARYPINGAALQRRGGTARHDAVAWGYARAASDRGVHIIQNCEVTGIRRGPDGRVTGVETSRGFIGAKKVAVSAAG
HTTTIMKMADVRVPLQSSPLQALVSEPLKPIFPCVVMSNTVHAYISQSDKGELVIGAGTDQYNSYSQTGGLQIITHTLDA
ICELFPMFRRVKMMRQWGGIVDNTPDRSAIQSKTPVPGLYVNCGWGTGGFKATPGSANLFAHLIARDEPHKFNAGLTLER
FRSGRLIDEAAAAAVAH

Sequences:

>Translated_417_residues
MRKYSVFAVAREALRGHKGWEKQWTSPEPRAEYDVVIIGAGGHGLGAAYYLAKEHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLYEESMQIYEHSMKLWEGLSQELNYNVMYSPRGVMMLSHNIHDQQSFKRHIHANRLYGIDNEWLTPEQAKAYCPPL
DISASARYPINGAALQRRGGTARHDAVAWGYARAASDRGVHIIQNCEVTGIRRGPDGRVTGVETSRGFIGAKKVAVSAAG
HTTTIMKMADVRVPLQSSPLQALVSEPLKPIFPCVVMSNTVHAYISQSDKGELVIGAGTDQYNSYSQTGGLQIITHTLDA
ICELFPMFRRVKMMRQWGGIVDNTPDRSAIQSKTPVPGLYVNCGWGTGGFKATPGSANLFAHLIARDEPHKFNAGLTLER
FRSGRLIDEAAAAAVAH
>Mature_417_residues
MRKYSVFAVAREALRGHKGWEKQWTSPEPRAEYDVVIIGAGGHGLGAAYYLAKEHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLYEESMQIYEHSMKLWEGLSQELNYNVMYSPRGVMMLSHNIHDQQSFKRHIHANRLYGIDNEWLTPEQAKAYCPPL
DISASARYPINGAALQRRGGTARHDAVAWGYARAASDRGVHIIQNCEVTGIRRGPDGRVTGVETSRGFIGAKKVAVSAAG
HTTTIMKMADVRVPLQSSPLQALVSEPLKPIFPCVVMSNTVHAYISQSDKGELVIGAGTDQYNSYSQTGGLQIITHTLDA
ICELFPMFRRVKMMRQWGGIVDNTPDRSAIQSKTPVPGLYVNCGWGTGGFKATPGSANLFAHLIARDEPHKFNAGLTLER
FRSGRLIDEAAAAAVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=386, Percent_Identity=24.0932642487047, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI21361378, Length=386, Percent_Identity=24.0932642487047, Blast_Score=99, Evalue=1e-20,
Organism=Drosophila melanogaster, GI20130091, Length=382, Percent_Identity=21.9895287958115, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45750; Mature: 45750

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYSVFAVAREALRGHKGWEKQWTSPEPRAEYDVVIIGAGGHGLGAAYYLAKEHGITNV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHCCCCEE
AVIEKGWLGGGNTGRNTTIIRSNYLYEESMQIYEHSMKLWEGLSQELNYNVMYSPRGVMM
EEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
LSHNIHDQQSFKRHIHANRLYGIDNEWLTPEQAKAYCPPLDISASARYPINGAALQRRGG
EECCCCHHHHHHHHHCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCC
TARHDAVAWGYARAASDRGVHIIQNCEVTGIRRGPDGRVTGVETSRGFIGAKKVAVSAAG
CCCHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCEEEEEECC
HTTTIMKMADVRVPLQSSPLQALVSEPLKPIFPCVVMSNTVHAYISQSDKGELVIGAGTD
CCEEEEEEHHEECCCCCCHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCC
QYNSYSQTGGLQIITHTLDAICELFPMFRRVKMMRQWGGIVDNTPDRSAIQSKTPVPGLY
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEE
VNCGWGTGGFKATPGSANLFAHLIARDEPHKFNAGLTLERFRSGRLIDEAAAAAVAH
EECCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRKYSVFAVAREALRGHKGWEKQWTSPEPRAEYDVVIIGAGGHGLGAAYYLAKEHGITNV
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHCCCCEE
AVIEKGWLGGGNTGRNTTIIRSNYLYEESMQIYEHSMKLWEGLSQELNYNVMYSPRGVMM
EEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
LSHNIHDQQSFKRHIHANRLYGIDNEWLTPEQAKAYCPPLDISASARYPINGAALQRRGG
EECCCCHHHHHHHHHCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCC
TARHDAVAWGYARAASDRGVHIIQNCEVTGIRRGPDGRVTGVETSRGFIGAKKVAVSAAG
CCCHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCEEEEEECC
HTTTIMKMADVRVPLQSSPLQALVSEPLKPIFPCVVMSNTVHAYISQSDKGELVIGAGTD
CCEEEEEEHHEECCCCCCHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCC
QYNSYSQTGGLQIITHTLDAICELFPMFRRVKMMRQWGGIVDNTPDRSAIQSKTPVPGLY
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEE
VNCGWGTGGFKATPGSANLFAHLIARDEPHKFNAGLTLERFRSGRLIDEAAAAAVAH
EECCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]