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The map label for this gene is soxD [H]

Identifier: 209550933

GI number: 209550933

Start: 3466166

End: 3466507

Strand: Reverse

Name: soxD [H]

Synonym: Rleg2_3357

Alternate gene names: 209550933

Gene position: 3466507-3466166 (Counterclockwise)

Preceding gene: 209550934

Following gene: 209550932

Centisome position: 76.39

GC content: 59.65

Gene sequence:

>342_bases
ATGCTGCTGATCCATTGCCCCTACTGTCAGGAAGAGCGCTCGGAGCTTGAATTCCGTGGCGCCGGTGACGCGCATATCGT
GCGGCCTGCCGATATCGCCTCGGTCTCGGACGAGGAATTCGAAGCCTATTTCTTTCTGCGTGACAATCCGAAGGGCCTGA
TCTTCGAACGCTGGCGGCATATTCACGGCTGCGGACGCTTCTTCAACGCGGCCCGCGATACGGTGAGCGACAAGTTCATC
GTGACTTACAAGGCGGGCGAGCCGAAGCCTCAGATCGGTGCTGCGGCCGAGAAGCATGCGCCTGTCGAGACCTATGAAGC
CCTGGAAGGAGAGGCGCAATGA

Upstream 100 bases:

>100_bases
ATGCTATCTGGACGTTCGCTCCTTTCATCGTTCACCCCCTCATCCGCCTTTCAGGCACCTTCTCCCCAATGGGGAGAAGG
GAAGGAGAAGGAAATCACAC

Downstream 100 bases:

>100_bases
GCGGCGCGAACCGTATTGTCGGCAAGGGCCGTCTGACGCCGGCCAGAGCCGCGCGTTTCAGCTTCGACGGCAAGAGCTAC
ACGGCGCTCGAAGGCGATAC

Product: sarcosine oxidase subunit delta family

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MLLIHCPYCQEERSELEFRGAGDAHIVRPADIASVSDEEFEAYFFLRDNPKGLIFERWRHIHGCGRFFNAARDTVSDKFI
VTYKAGEPKPQIGAAAEKHAPVETYEALEGEAQ

Sequences:

>Translated_113_residues
MLLIHCPYCQEERSELEFRGAGDAHIVRPADIASVSDEEFEAYFFLRDNPKGLIFERWRHIHGCGRFFNAARDTVSDKFI
VTYKAGEPKPQIGAAAEKHAPVETYEALEGEAQ
>Mature_113_residues
MLLIHCPYCQEERSELEFRGAGDAHIVRPADIASVSDEEFEAYFFLRDNPKGLIFERWRHIHGCGRFFNAARDTVSDKFI
VTYKAGEPKPQIGAAAEKHAPVETYEALEGEAQ

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 12814; Mature: 12814

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIHCPYCQEERSELEFRGAGDAHIVRPADIASVSDEEFEAYFFLRDNPKGLIFERWRH
CEEEECCCCCCCHHCEEECCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHH
IHGCGRFFNAARDTVSDKFIVTYKAGEPKPQIGAAAEKHAPVETYEALEGEAQ
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MLLIHCPYCQEERSELEFRGAGDAHIVRPADIASVSDEEFEAYFFLRDNPKGLIFERWRH
CEEEECCCCCCCHHCEEECCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHH
IHGCGRFFNAARDTVSDKFIVTYKAGEPKPQIGAAAEKHAPVETYEALEGEAQ
HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]