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The map label for this gene is ycaD [C]

Identifier: 209550821

GI number: 209550821

Start: 3334749

End: 3336047

Strand: Direct

Name: ycaD [C]

Synonym: Rleg2_3245

Alternate gene names: 209550821

Gene position: 3334749-3336047 (Clockwise)

Preceding gene: 209550819

Following gene: 209550822

Centisome position: 73.49

GC content: 65.05

Gene sequence:

>1299_bases
ATGAAGAGAAACCTTCTGTCCGTCGCCGCGCTGCTGTTTGGCACGCTCTTCCTTTTCATGGGCAACGGCCTGCAGGGCAT
CCTGCTTCCCGTGCGCGGCAATCTCGAAGGCTACGCCACGACGACGCTCGGCCTGCTCGGCACCTCATGGGCCGGGGGCT
TCGTTATCGGCTGCCTGGTGGCGCCGAAACTGGTGCGCCGGGTCGGCCATGTCAGAGCCTTCTCCGGCTTCATCTCGATC
ATCGCTATCATCGCCCTGGTCAGCGGCATCATCATCCATCCGATCTGGTGGGTGGTCCTGCGCGCGGTTACCGGCTTCTC
CACCGCCGGCACCTCGATGATCATCGAAAGCTGGCTGAACGAGCGCGCCAGCAACGAGAGCCGCGGCGCGATCTTCTCGC
TCTATATCGGCATCACCCTGCTCGGCGTCGTCGGCGGCCAGATGATGATCCCGCTCGAGGACGTGCGCACGCCGGTGCTG
TTCATGATCTGCGGCATTTTCTATTGCATCGCCATGCTGCCGACGACGCTTTCGACCGCCGCTTCGCCGCAGCCGCTGAA
GGCTGTCCGCCTCGACCTGCCGGCGCTCTATCGCAATTCGCCGGTCTCCTGCCTCGGTATCCTGCTCGTCGGCATCGCCA
ACGGCGCCTATGGCACGCTCGGCGCCGTCTTCGGCGCCGGCGCCGGCCTCTCCGACACCAGCATCGCCATCATGATGAGC
GCCACCATCTTCGCCGGCGCGATGATGCAGCTGCCCGCCGGCCGGCTTTCCGATCGTATCGACCGGCGCTATGTGCTCGC
CGCCATGTCCAGCGTCGCCGCCCTTGCCGGCTTGTTGATCTTCATACTCCACCCGACGTCACCAGCCTTGCTGATCGGGC
TCGTTGTCCTTTACGGCGCGGTGGCCAATACACTCTATCCGATCGCCGTCGCCCACGCGAACGACTTCGCGGCATCGGAG
GATTTCGTCAAGGTCTCCGGTGGCCTGCTGCTGCTCTACGGCATCGGTACGGTGATCGGCCCGACGATCGGCGGTCCCGT
CATGTCGGTGATCACCCCGCATGCACTTTTCCTCGTCACCGCCATCGCCCACGTGCTGATCACCGTTTACGCCATCATCC
GGAGCCGCATCCGCGCCGCCGTCCCGGCCAGCGACCGCGACGCCTATACGACGATCCCGACCGGCACCTCGCCGATGCTG
ACGCCGCAGAGCATGTCGCTTGCCGATCGCGGCGCCGGCAAACCGGCGGATTCCGGCAAGTCTCCCGAAAGCGGCGATCC
TGCTGTAAAGTTCGGCTAA

Upstream 100 bases:

>100_bases
CGTAAAGACATTCCGGGGCACAATCAATCATCTTGAGGCTGGGCTGACGCAGGTCATGCCTTATGTCCGTTCCAAAATCA
CTGAGACCGAGTCTGGGGAA

Downstream 100 bases:

>100_bases
TGCATGTCGCCCGGAACTGCGCAGCGGTTCCGGGATAACGACCTGCATAAAAGCAAAGGACGAAAGGATGAATTTAGCCC
GGATCGGCCTAAATTCCAAT

Product: major facilitator superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MKRNLLSVAALLFGTLFLFMGNGLQGILLPVRGNLEGYATTTLGLLGTSWAGGFVIGCLVAPKLVRRVGHVRAFSGFISI
IAIIALVSGIIIHPIWWVVLRAVTGFSTAGTSMIIESWLNERASNESRGAIFSLYIGITLLGVVGGQMMIPLEDVRTPVL
FMICGIFYCIAMLPTTLSTAASPQPLKAVRLDLPALYRNSPVSCLGILLVGIANGAYGTLGAVFGAGAGLSDTSIAIMMS
ATIFAGAMMQLPAGRLSDRIDRRYVLAAMSSVAALAGLLIFILHPTSPALLIGLVVLYGAVANTLYPIAVAHANDFAASE
DFVKVSGGLLLLYGIGTVIGPTIGGPVMSVITPHALFLVTAIAHVLITVYAIIRSRIRAAVPASDRDAYTTIPTGTSPML
TPQSMSLADRGAGKPADSGKSPESGDPAVKFG

Sequences:

>Translated_432_residues
MKRNLLSVAALLFGTLFLFMGNGLQGILLPVRGNLEGYATTTLGLLGTSWAGGFVIGCLVAPKLVRRVGHVRAFSGFISI
IAIIALVSGIIIHPIWWVVLRAVTGFSTAGTSMIIESWLNERASNESRGAIFSLYIGITLLGVVGGQMMIPLEDVRTPVL
FMICGIFYCIAMLPTTLSTAASPQPLKAVRLDLPALYRNSPVSCLGILLVGIANGAYGTLGAVFGAGAGLSDTSIAIMMS
ATIFAGAMMQLPAGRLSDRIDRRYVLAAMSSVAALAGLLIFILHPTSPALLIGLVVLYGAVANTLYPIAVAHANDFAASE
DFVKVSGGLLLLYGIGTVIGPTIGGPVMSVITPHALFLVTAIAHVLITVYAIIRSRIRAAVPASDRDAYTTIPTGTSPML
TPQSMSLADRGAGKPADSGKSPESGDPAVKFG
>Mature_432_residues
MKRNLLSVAALLFGTLFLFMGNGLQGILLPVRGNLEGYATTTLGLLGTSWAGGFVIGCLVAPKLVRRVGHVRAFSGFISI
IAIIALVSGIIIHPIWWVVLRAVTGFSTAGTSMIIESWLNERASNESRGAIFSLYIGITLLGVVGGQMMIPLEDVRTPVL
FMICGIFYCIAMLPTTLSTAASPQPLKAVRLDLPALYRNSPVSCLGILLVGIANGAYGTLGAVFGAGAGLSDTSIAIMMS
ATIFAGAMMQLPAGRLSDRIDRRYVLAAMSSVAALAGLLIFILHPTSPALLIGLVVLYGAVANTLYPIAVAHANDFAASE
DFVKVSGGLLLLYGIGTVIGPTIGGPVMSVITPHALFLVTAIAHVLITVYAIIRSRIRAAVPASDRDAYTTIPTGTSPML
TPQSMSLADRGAGKPADSGKSPESGDPAVKFG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=339, Percent_Identity=25.3687315634218, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44927; Mature: 44927

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNLLSVAALLFGTLFLFMGNGLQGILLPVRGNLEGYATTTLGLLGTSWAGGFVIGCLV
CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
APKLVRRVGHVRAFSGFISIIAIIALVSGIIIHPIWWVVLRAVTGFSTAGTSMIIESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ERASNESRGAIFSLYIGITLLGVVGGQMMIPLEDVRTPVLFMICGIFYCIAMLPTTLSTA
HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ASPQPLKAVRLDLPALYRNSPVSCLGILLVGIANGAYGTLGAVFGAGAGLSDTSIAIMMS
CCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHH
ATIFAGAMMQLPAGRLSDRIDRRYVLAAMSSVAALAGLLIFILHPTSPALLIGLVVLYGA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VANTLYPIAVAHANDFAASEDFVKVSGGLLLLYGIGTVIGPTIGGPVMSVITPHALFLVT
HHHHHHHHHEECCCCCCCCCCCEECCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHH
AIAHVLITVYAIIRSRIRAAVPASDRDAYTTIPTGTSPMLTPQSMSLADRGAGKPADSGK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCC
SPESGDPAVKFG
CCCCCCCCCCCC
>Mature Secondary Structure
MKRNLLSVAALLFGTLFLFMGNGLQGILLPVRGNLEGYATTTLGLLGTSWAGGFVIGCLV
CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
APKLVRRVGHVRAFSGFISIIAIIALVSGIIIHPIWWVVLRAVTGFSTAGTSMIIESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ERASNESRGAIFSLYIGITLLGVVGGQMMIPLEDVRTPVLFMICGIFYCIAMLPTTLSTA
HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ASPQPLKAVRLDLPALYRNSPVSCLGILLVGIANGAYGTLGAVFGAGAGLSDTSIAIMMS
CCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHH
ATIFAGAMMQLPAGRLSDRIDRRYVLAAMSSVAALAGLLIFILHPTSPALLIGLVVLYGA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VANTLYPIAVAHANDFAASEDFVKVSGGLLLLYGIGTVIGPTIGGPVMSVITPHALFLVT
HHHHHHHHHEECCCCCCCCCCCEECCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHH
AIAHVLITVYAIIRSRIRAAVPASDRDAYTTIPTGTSPMLTPQSMSLADRGAGKPADSGK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCC
SPESGDPAVKFG
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]