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The map label for this gene is ybgF [C]

Identifier: 209550774

GI number: 209550774

Start: 3287673

End: 3288662

Strand: Reverse

Name: ybgF [C]

Synonym: Rleg2_3198

Alternate gene names: 209550774

Gene position: 3288662-3287673 (Counterclockwise)

Preceding gene: 209550775

Following gene: 209550773

Centisome position: 72.47

GC content: 62.22

Gene sequence:

>990_bases
ATGAAGAAACTTGTCGTGGCAGGCATGCTGTGCCTCGCGGCTGTGACCGGGAGCGAACGGGCGGCCTATTCCGCCTCGTT
CTTTGGGCTGCATCTCGGCGGCCGGTCCACGGAAAACCAAGCGGCGCCGCCTGTTGTCAAGGTGCAGAGCGGCGATGCCG
AGGTTCGCGTGCAACAGCTCGAAGAGCAGCTTCGGCAGTTGAATGGCCGGATCGAGGAGATGAGCTTCCAGCTGCTGCAG
ATGCAGGAGACGATCCGCAAGCAGCAGGAAGACAATGAATTCCGCTTCCAACAGTTGGAAAAGACGGGTGCCAGCGGCGG
CGGTGCCAAAGCTCCTGTCAAGAAGAGCGAGACCGATACCGCTCCGGCAGCGTCCGGCGGCGATGACGTTGCCAGGGTGA
TCCAAGCACCGCAGGGAGCCGAAACGGCTCCCTCCACCAACGTGCCCAGCAATACTGGCCTCGGGCAGCCGCCGAAGGAG
CTCGGCTCGATCGATTTCGATCAGAACGGCAACCCGGTCGGCGGAACCGTCGATGCAAATGCGGGAGTGGGCTCCGGCCC
TATCCCCAATGCCAATCCCGGCGCGCCGCAGCAGACTGCCTCGCTTGGCGGTGAGGCGGACCAGTACAAGTCGGCCTATG
GTCACGTCTTATCAGGCGATTACAGCACGGCCGAACAAGAGTTCACCCAGTACATCACCCGCTACCCGAGCAGCGCGCGG
GCGGCGGACGCCAATTTCTGGCTTGGCGAAGCGCTCTATTCGCAGGGCAAGTACAATGAGGCGGCCAAGACCTTCCTCAA
TGCGCACCAGAAATACGCTACATCGGAAAAGGCGCCCGAGATGCTGTTGAAGCTCGGCATGTCGCTGGCCGCCCTCGACA
ATACCGAGACGGCCTGTGCGACGCTGCGCGAAGTCTCGAAGCGGTATCCGAAGGCTTCGCGTGCCGTCATAAGCAAGGTT
GCGAGCGAACAGAAGCGCCTCGCCTGCTAA

Upstream 100 bases:

>100_bases
CCACACTTTGGCCAGACTCCGTTGCTTTTTGACAGCAATTGGAAAAATCTCCTGTTCGTGCCATCGAGGTGCGAAGAATC
ACTGGGACAGGACGATACAT

Downstream 100 bases:

>100_bases
GGTCTTCCGGCATGTCTCCGGAAGCCCGATCGCCGCGAGAGGCGATCCTCCAGTTTCTCAGCTCGCTTCAAAGCCCTGTA
CGCATTCTCGTCGCCATATC

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; L-Pal System YbgF; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain Protein; TPR Domain-Containing Protein; TPR RepeatMolluscan Rhodopsin C-Terminal Domain Protein; TPR Repeat Protein; L-Pal System YbgF-Like Protein; TPR Domain Family Protein; L System Periplasmic Component YbgF; Tetratricopeptide TPR2 Protein; Tetratricopeptide Domain-Containing Protein

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKKLVVAGMLCLAAVTGSERAAYSASFFGLHLGGRSTENQAAPPVVKVQSGDAEVRVQQLEEQLRQLNGRIEEMSFQLLQ
MQETIRKQQEDNEFRFQQLEKTGASGGGAKAPVKKSETDTAPAASGGDDVARVIQAPQGAETAPSTNVPSNTGLGQPPKE
LGSIDFDQNGNPVGGTVDANAGVGSGPIPNANPGAPQQTASLGGEADQYKSAYGHVLSGDYSTAEQEFTQYITRYPSSAR
AADANFWLGEALYSQGKYNEAAKTFLNAHQKYATSEKAPEMLLKLGMSLAALDNTETACATLREVSKRYPKASRAVISKV
ASEQKRLAC

Sequences:

>Translated_329_residues
MKKLVVAGMLCLAAVTGSERAAYSASFFGLHLGGRSTENQAAPPVVKVQSGDAEVRVQQLEEQLRQLNGRIEEMSFQLLQ
MQETIRKQQEDNEFRFQQLEKTGASGGGAKAPVKKSETDTAPAASGGDDVARVIQAPQGAETAPSTNVPSNTGLGQPPKE
LGSIDFDQNGNPVGGTVDANAGVGSGPIPNANPGAPQQTASLGGEADQYKSAYGHVLSGDYSTAEQEFTQYITRYPSSAR
AADANFWLGEALYSQGKYNEAAKTFLNAHQKYATSEKAPEMLLKLGMSLAALDNTETACATLREVSKRYPKASRAVISKV
ASEQKRLAC
>Mature_329_residues
MKKLVVAGMLCLAAVTGSERAAYSASFFGLHLGGRSTENQAAPPVVKVQSGDAEVRVQQLEEQLRQLNGRIEEMSFQLLQ
MQETIRKQQEDNEFRFQQLEKTGASGGGAKAPVKKSETDTAPAASGGDDVARVIQAPQGAETAPSTNVPSNTGLGQPPKE
LGSIDFDQNGNPVGGTVDANAGVGSGPIPNANPGAPQQTASLGGEADQYKSAYGHVLSGDYSTAEQEFTQYITRYPSSAR
AADANFWLGEALYSQGKYNEAAKTFLNAHQKYATSEKAPEMLLKLGMSLAALDNTETACATLREVSKRYPKASRAVISKV
ASEQKRLAC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=145, Percent_Identity=31.0344827586207, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34879; Mature: 34879

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLVVAGMLCLAAVTGSERAAYSASFFGLHLGGRSTENQAAPPVVKVQSGDAEVRVQQL
CCHHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHH
EEQLRQLNGRIEEMSFQLLQMQETIRKQQEDNEFRFQQLEKTGASGGGAKAPVKKSETDT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
APAASGGDDVARVIQAPQGAETAPSTNVPSNTGLGQPPKELGSIDFDQNGNPVGGTVDAN
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECC
AGVGSGPIPNANPGAPQQTASLGGEADQYKSAYGHVLSGDYSTAEQEFTQYITRYPSSAR
CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCHHCCCCHHHHHHHHHHHHHCCCCCC
AADANFWLGEALYSQGKYNEAAKTFLNAHQKYATSEKAPEMLLKLGMSLAALDNTETACA
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHH
TLREVSKRYPKASRAVISKVASEQKRLAC
HHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLVVAGMLCLAAVTGSERAAYSASFFGLHLGGRSTENQAAPPVVKVQSGDAEVRVQQL
CCHHHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHH
EEQLRQLNGRIEEMSFQLLQMQETIRKQQEDNEFRFQQLEKTGASGGGAKAPVKKSETDT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
APAASGGDDVARVIQAPQGAETAPSTNVPSNTGLGQPPKELGSIDFDQNGNPVGGTVDAN
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECC
AGVGSGPIPNANPGAPQQTASLGGEADQYKSAYGHVLSGDYSTAEQEFTQYITRYPSSAR
CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCHHCCCCHHHHHHHHHHHHHCCCCCC
AADANFWLGEALYSQGKYNEAAKTFLNAHQKYATSEKAPEMLLKLGMSLAALDNTETACA
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHH
TLREVSKRYPKASRAVISKVASEQKRLAC
HHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA