Click here to switch to the map view.

The map label for this gene is ftrA [H]

Identifier: 209550607

GI number: 209550607

Start: 3090066

End: 3091067

Strand: Reverse

Name: ftrA [H]

Synonym: Rleg2_3031

Alternate gene names: 209550607

Gene position: 3091067-3090066 (Counterclockwise)

Preceding gene: 209550611

Following gene: 209550601

Centisome position: 68.12

GC content: 65.37

Gene sequence:

>1002_bases
ATGACCGACAGCGTAAAGATCATGCCAAACTTATCACCACAGCAGACGACAGGACCGTTGGTCACAGCCCTTGCCTATGA
CGGGCTCTGCACCTTCGAATTCGGCATCGCCTACGAGGTCTTCGGCCTGCCGCGCCCGGAGATGGGCGAAGGCTGGTATC
GCTTCTCGGTCTGCGGCATCGAGCCGGGACCGCTTCACGCCGCCGGCGGGTTGACGGTCGCGGTCGACAAGGGACTGGAG
ATCCTTGATGAGGCGGATCTGATCGTCGTGCCCGGCTGGCGGGCGATCGACGCACCGGTGCCCGAGCCGCTCGCCGAGGC
GCTCCGGGCAGCGCATCAGCGCGGCGCGCGCATCATGTCGCTCTGCTCCGGCGTTGCGGTTCTGGCCGGATCCGGATTGC
TTGCCAACCGCAAGGCGACGACGCATTGGCGTTATGTCGCCTCGATCGCCGCTCGTTATCCCGATATCGCGCTCGATGCC
GGCGTTCTCTACATCGATGAGGGCAGCCTGTTGACGGCGGCGGGCAGTGCCGCCGGCATCGATCTCTGCCTGCATGTGGT
GCGCGGCGATTTCGGCTCGGAGGCCGCAAACAGCGTCGCCCGCCGCCTCGTCGTGCCGCCGCACCGCGAAGGAGGGCAGG
CGCAGTTCATCAGCGCCCCGGTTCCGGAAGAGCGTGAGGGCATCCGTCTCGGCCCATTGATCGAATGGATGCGCGAAAGC
CTTTCGCAGGAGCAGCCGATCAGGCTGCTTGCGAAAAGAGCTGGCATGAGCATGCGCACTTTCCAGCGCCGCTTCGAAGC
GACGACGGGTCTCAGCGTCGGCGAATGGCTGCTGAAGGAGCGGCTGCGCCATGCCCGTGACCTTCTCGAGAAAGAGCTTG
CGGTCTCGCTCGACGACATCGCGGTATCAAGCGGCTTCGGCACGCTGGCGACGATGCGGCATCATTTTCGCAGGCGGCTC
GGGACGAGCCCGAGCGCTTACAGGCGGTCGTTCGGTCTTTGA

Upstream 100 bases:

>100_bases
GCAGGGATTTCAGCGACGGGGCTTGGCATCGGTCTTTCCTTTCCATGTTGGAGTTGCCGCCTGGTATCGCCGATGCTAGA
GCTTTGCGAAATTGGCCATT

Downstream 100 bases:

>100_bases
CCCGTGGGCAGGCTGGAGATGAAGAAGATGATGATGAAGGCGAATCATCTGGCTGGCCGAGATCTCGTTGCTGCCGACTG
TGCCTCATAGCGAACAACAC

Product: transcriptional activator FtrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MTDSVKIMPNLSPQQTTGPLVTALAYDGLCTFEFGIAYEVFGLPRPEMGEGWYRFSVCGIEPGPLHAAGGLTVAVDKGLE
ILDEADLIVVPGWRAIDAPVPEPLAEALRAAHQRGARIMSLCSGVAVLAGSGLLANRKATTHWRYVASIAARYPDIALDA
GVLYIDEGSLLTAAGSAAGIDLCLHVVRGDFGSEAANSVARRLVVPPHREGGQAQFISAPVPEEREGIRLGPLIEWMRES
LSQEQPIRLLAKRAGMSMRTFQRRFEATTGLSVGEWLLKERLRHARDLLEKELAVSLDDIAVSSGFGTLATMRHHFRRRL
GTSPSAYRRSFGL

Sequences:

>Translated_333_residues
MTDSVKIMPNLSPQQTTGPLVTALAYDGLCTFEFGIAYEVFGLPRPEMGEGWYRFSVCGIEPGPLHAAGGLTVAVDKGLE
ILDEADLIVVPGWRAIDAPVPEPLAEALRAAHQRGARIMSLCSGVAVLAGSGLLANRKATTHWRYVASIAARYPDIALDA
GVLYIDEGSLLTAAGSAAGIDLCLHVVRGDFGSEAANSVARRLVVPPHREGGQAQFISAPVPEEREGIRLGPLIEWMRES
LSQEQPIRLLAKRAGMSMRTFQRRFEATTGLSVGEWLLKERLRHARDLLEKELAVSLDDIAVSSGFGTLATMRHHFRRRL
GTSPSAYRRSFGL
>Mature_332_residues
TDSVKIMPNLSPQQTTGPLVTALAYDGLCTFEFGIAYEVFGLPRPEMGEGWYRFSVCGIEPGPLHAAGGLTVAVDKGLEI
LDEADLIVVPGWRAIDAPVPEPLAEALRAAHQRGARIMSLCSGVAVLAGSGLLANRKATTHWRYVASIAARYPDIALDAG
VLYIDEGSLLTAAGSAAGIDLCLHVVRGDFGSEAANSVARRLVVPPHREGGQAQFISAPVPEEREGIRLGPLIEWMRESL
SQEQPIRLLAKRAGMSMRTFQRRFEATTGLSVGEWLLKERLRHARDLLEKELAVSLDDIAVSSGFGTLATMRHHFRRRLG
TSPSAYRRSFGL

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36081; Mature: 35950

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSVKIMPNLSPQQTTGPLVTALAYDGLCTFEFGIAYEVFGLPRPEMGEGWYRFSVCGI
CCCCEEECCCCCCCCCCCHHHHHHHHCCEEEEECCCEEEECCCCCCCCCCCEEEEEEECC
EPGPLHAAGGLTVAVDKGLEILDEADLIVVPGWRAIDAPVPEPLAEALRAAHQRGARIMS
CCCCCCCCCCEEEEECCCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
LCSGVAVLAGSGLLANRKATTHWRYVASIAARYPDIALDAGVLYIDEGSLLTAAGSAAGI
HHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCEEEEECCCEEEECCCHHHH
DLCLHVVRGDFGSEAANSVARRLVVPPHREGGQAQFISAPVPEEREGIRLGPLIEWMRES
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHH
LSQEQPIRLLAKRAGMSMRTFQRRFEATTGLSVGEWLLKERLRHARDLLEKELAVSLDDI
HCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AVSSGFGTLATMRHHFRRRLGTSPSAYRRSFGL
HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure 
TDSVKIMPNLSPQQTTGPLVTALAYDGLCTFEFGIAYEVFGLPRPEMGEGWYRFSVCGI
CCCEEECCCCCCCCCCCHHHHHHHHCCEEEEECCCEEEECCCCCCCCCCCEEEEEEECC
EPGPLHAAGGLTVAVDKGLEILDEADLIVVPGWRAIDAPVPEPLAEALRAAHQRGARIMS
CCCCCCCCCCEEEEECCCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
LCSGVAVLAGSGLLANRKATTHWRYVASIAARYPDIALDAGVLYIDEGSLLTAAGSAAGI
HHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCEEEEECCCEEEECCCHHHH
DLCLHVVRGDFGSEAANSVARRLVVPPHREGGQAQFISAPVPEEREGIRLGPLIEWMRES
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHH
LSQEQPIRLLAKRAGMSMRTFQRRFEATTGLSVGEWLLKERLRHARDLLEKELAVSLDDI
HCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AVSSGFGTLATMRHHFRRRLGTSPSAYRRSFGL
HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]