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The map label for this gene is ydcO [H]

Identifier: 209550384

GI number: 209550384

Start: 2850416

End: 2851615

Strand: Reverse

Name: ydcO [H]

Synonym: Rleg2_2805

Alternate gene names: 209550384

Gene position: 2851615-2850416 (Counterclockwise)

Preceding gene: 209550385

Following gene: 209550383

Centisome position: 62.84

GC content: 67.0

Gene sequence:

>1200_bases
ATGCTCAAAGATTTTTCCGTCCAGGCTATGTTCATGGGGCTGCTGACCGCCTTCGTCGGCTCCGCCAGCTCGTTTGCCGT
CGTGCTGCACGGGCTCGAGGCGGTCGGTGCAACAGATGCGCAGGCGGCTTCGGGGCTGATGGCGTTGTCGATCTCCATGG
GCATCTGCGCGATCGTGCTCAGTGCGGTGACGCGATTGCCGATCAGCATCGCCTGGTCGACGCCGGGTGCCGCACTGCTC
GCGAGCACCGGACCGATCGAGGGCGGCTTCAACGCGGCGGTCGGAGCATTCCTGATCTGTGGCGCGCTGATCGTGGTCGC
CGGGCTGTTCAAGCCGCTCGGCCGGGCGGTCGCCGCTATTCCGGCGCCGCTTGCCAATGCGATGCTCTCCGGCGTGCTGA
TCGGCCTCTGCTTCGCGCCGGTGAAGGCGATCGGCTTCAATCCCGTCCTCGGCTTGCCGATCGTCGTCGCCTGGATCGTC
GTCGGCGCCTTCAAACGACTCTGGGCGGTGCCGGCAGCACTCGCAGCCTTCGTGCTGGTGCTCACCTTCGGCGTCGATAT
TCCGGACGGCGCGCTCAGTTCGCTCGAACAGTCGCTGGTGCCGGCGGCTGAATTCGTCCGGCCGGTGTTCAGCCTCGCCG
GCCTTGTCTCGATCGCGCTGCCGCTGTTCATCGTCACCATGGCTTCGCAGAACATTCCGGGTATCGCCGTCTTGAAGGTC
AACCACTACGATCCGAAGCCCGGTCCGCTCTTTGCCGTCACCGGCTTCTTCTCGCTGCTGTCGGCGCCGTTCGGCGGCCA
CGCCGTCAATCTGGCGGCGATCACCGCGGCGATGTGCGCCGGACAGGATGCCCACACGGATCCGAAGCGGCGTTATTGGG
CGTCACTGACCGCCGGCGTCGGGTATGTCATCCTGGGGCTGCTTGCCGGCGCGGTGACGGCTTTCGTCGCGCTTGCGCCT
CCGATCCTGATCGAGGCGGTTGCCGGGCTGGCGCTGGTCGGGGCTTTTTCCTCCTCGGCGATGTCGGCCTTCCAGGCGCC
GGAGTCGCGCGAGGCGGCGGCGATCACCTTCCTCGTCACCGCCTCCGGCGTTTCCTTCGGCGGCATTTCCGGCGCCTTCT
GGGGCCTGATCGCCGGCGGGCTGATGCTGGCGCTGTCGCGGCTGGTGAGCGTTTGGAAGGACCGAAGCCAGCAGCGCTAA

Upstream 100 bases:

>100_bases
TGCCGGAAGACGCGGGTGCTGAACGGAAAGAGCTGAATTCGGACTTGCGCGGGCGGCAACCGTCATGCTCCATGCGCCAT
CCCGCATCTCGAGTTCCGCC

Downstream 100 bases:

>100_bases
TGCATGTCGCCCGGAAGTGTGCAGCGGTTCCGGGATAACGACATGCATAAAAACAAAGAGCTTTAGCGGAATGGCGTTGC
GCCTTTGGCGGCCAAAAGCC

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MLKDFSVQAMFMGLLTAFVGSASSFAVVLHGLEAVGATDAQAASGLMALSISMGICAIVLSAVTRLPISIAWSTPGAALL
ASTGPIEGGFNAAVGAFLICGALIVVAGLFKPLGRAVAAIPAPLANAMLSGVLIGLCFAPVKAIGFNPVLGLPIVVAWIV
VGAFKRLWAVPAALAAFVLVLTFGVDIPDGALSSLEQSLVPAAEFVRPVFSLAGLVSIALPLFIVTMASQNIPGIAVLKV
NHYDPKPGPLFAVTGFFSLLSAPFGGHAVNLAAITAAMCAGQDAHTDPKRRYWASLTAGVGYVILGLLAGAVTAFVALAP
PILIEAVAGLALVGAFSSSAMSAFQAPESREAAAITFLVTASGVSFGGISGAFWGLIAGGLMLALSRLVSVWKDRSQQR

Sequences:

>Translated_399_residues
MLKDFSVQAMFMGLLTAFVGSASSFAVVLHGLEAVGATDAQAASGLMALSISMGICAIVLSAVTRLPISIAWSTPGAALL
ASTGPIEGGFNAAVGAFLICGALIVVAGLFKPLGRAVAAIPAPLANAMLSGVLIGLCFAPVKAIGFNPVLGLPIVVAWIV
VGAFKRLWAVPAALAAFVLVLTFGVDIPDGALSSLEQSLVPAAEFVRPVFSLAGLVSIALPLFIVTMASQNIPGIAVLKV
NHYDPKPGPLFAVTGFFSLLSAPFGGHAVNLAAITAAMCAGQDAHTDPKRRYWASLTAGVGYVILGLLAGAVTAFVALAP
PILIEAVAGLALVGAFSSSAMSAFQAPESREAAAITFLVTASGVSFGGISGAFWGLIAGGLMLALSRLVSVWKDRSQQR
>Mature_399_residues
MLKDFSVQAMFMGLLTAFVGSASSFAVVLHGLEAVGATDAQAASGLMALSISMGICAIVLSAVTRLPISIAWSTPGAALL
ASTGPIEGGFNAAVGAFLICGALIVVAGLFKPLGRAVAAIPAPLANAMLSGVLIGLCFAPVKAIGFNPVLGLPIVVAWIV
VGAFKRLWAVPAALAAFVLVLTFGVDIPDGALSSLEQSLVPAAEFVRPVFSLAGLVSIALPLFIVTMASQNIPGIAVLKV
NHYDPKPGPLFAVTGFFSLLSAPFGGHAVNLAAITAAMCAGQDAHTDPKRRYWASLTAGVGYVILGLLAGAVTAFVALAP
PILIEAVAGLALVGAFSSSAMSAFQAPESREAAAITFLVTASGVSFGGISGAFWGLIAGGLMLALSRLVSVWKDRSQQR

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=399, Percent_Identity=36.8421052631579, Blast_Score=220, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40327; Mature: 40327

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDFSVQAMFMGLLTAFVGSASSFAVVLHGLEAVGATDAQAASGLMALSISMGICAIVL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHH
SAVTRLPISIAWSTPGAALLASTGPIEGGFNAAVGAFLICGALIVVAGLFKPLGRAVAAI
HHHHHCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAPLANAMLSGVLIGLCFAPVKAIGFNPVLGLPIVVAWIVVGAFKRLWAVPAALAAFVLV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTFGVDIPDGALSSLEQSLVPAAEFVRPVFSLAGLVSIALPLFIVTMASQNIPGIAVLKV
HHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
NHYDPKPGPLFAVTGFFSLLSAPFGGHAVNLAAITAAMCAGQDAHTDPKRRYWASLTAGV
ECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GYVILGLLAGAVTAFVALAPPILIEAVAGLALVGAFSSSAMSAFQAPESREAAAITFLVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEE
ASGVSFGGISGAFWGLIAGGLMLALSRLVSVWKDRSQQR
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKDFSVQAMFMGLLTAFVGSASSFAVVLHGLEAVGATDAQAASGLMALSISMGICAIVL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHH
SAVTRLPISIAWSTPGAALLASTGPIEGGFNAAVGAFLICGALIVVAGLFKPLGRAVAAI
HHHHHCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAPLANAMLSGVLIGLCFAPVKAIGFNPVLGLPIVVAWIVVGAFKRLWAVPAALAAFVLV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTFGVDIPDGALSSLEQSLVPAAEFVRPVFSLAGLVSIALPLFIVTMASQNIPGIAVLKV
HHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
NHYDPKPGPLFAVTGFFSLLSAPFGGHAVNLAAITAAMCAGQDAHTDPKRRYWASLTAGV
ECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GYVILGLLAGAVTAFVALAPPILIEAVAGLALVGAFSSSAMSAFQAPESREAAAITFLVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEE
ASGVSFGGISGAFWGLIAGGLMLALSRLVSVWKDRSQQR
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]