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The map label for this gene is ydcV [H]

Identifier: 209550236

GI number: 209550236

Start: 2704350

End: 2705171

Strand: Reverse

Name: ydcV [H]

Synonym: Rleg2_2656

Alternate gene names: 209550236

Gene position: 2705171-2704350 (Counterclockwise)

Preceding gene: 209550237

Following gene: 209550235

Centisome position: 59.61

GC content: 61.8

Gene sequence:

>822_bases
ATGAACCACGAAAAACGCGGTCTCGAATTCTATCTGCTGGCGATCTTCTTCGCCGTTTTCGTGCTGTTCCTCTACGGTCC
GCTGTCGGCGGTGCTGATCCTCTCCTTCCAGGGGTCGGACGGCGGCCTGACCTTCCCGATGAACGGCGTTTCCACCCATT
GGTTCTTCAACCTGTTCGAAAAGCAGGCGGTCGGCGATTTCGGCGCCTCCTTCCGGCGCTCCTTCAGCCTCGGGCTGATG
GTGATGGTCGTGACCGTCACCGTGTCGCTGCTCGCCGGTCTTGCCTTCCGCCGCCGCTTCCGTGGTTCGACCGTGCTGTT
CTATGCGACGGTCGCCAGCCTCGTCGTGCCGTCGATCATCGTCTCGCTCGGTATCGGCGTCGTCTTCCAGGAGGGCGGGC
TGAAGCCCGCCTGGTATTCCTCGGCCTTCGGCGCCCATCTCACCTGGACGCTGCCATTCGGCGTGCTGATCATGTTTGCC
GTCTTCAACCGCTTCTCGCCGGCCTATGAAGAGGCAGCGCGCGACCTCGGCGCCTCCGCCTGGCAGACGTTCCGCCATGT
CGTGTTGCCGATGATCGCCCCGAGCCTGATCGGCGTCGGCCTATTCGGTTTCACGCTTTCCTACGACGAATTCGCTCGCA
CGTTGATGACGTCGGGCACCTACAATACGCTGCCGCTCGAAATCTACGGCATGACGACCAACGTCACGACGCCGGTGCTC
TATGCGCTCGGCACGGTGACGACACTGTTTTCCTTCACCATCATTCTCGTCGCGCTCGCCATCATGACGATGCTCAGCCG
GCGGCAGGCAAAGATCAACTGA

Upstream 100 bases:

>100_bases
TATCCGGCGGCCGCCGCCAACGCCGTGGTGCTGCTGGCCGTCGTGCTGCTGATGGTCGCGGCCATTCTGCGCGTCGTCGA
CATCCGCAAGGAACTTTGAG

Downstream 100 bases:

>100_bases
CATCATGCGCATCCTCATCGTCAATCCCAATACCACGGCCTCCATGACCGAGAAGGCCGCCAACGCCGCGCGTGCGGTGG
CCGCTTCCGGCACGGAAATC

Product: binding-protein-dependent transporters inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNHEKRGLEFYLLAIFFAVFVLFLYGPLSAVLILSFQGSDGGLTFPMNGVSTHWFFNLFEKQAVGDFGASFRRSFSLGLM
VMVVTVTVSLLAGLAFRRRFRGSTVLFYATVASLVVPSIIVSLGIGVVFQEGGLKPAWYSSAFGAHLTWTLPFGVLIMFA
VFNRFSPAYEEAARDLGASAWQTFRHVVLPMIAPSLIGVGLFGFTLSYDEFARTLMTSGTYNTLPLEIYGMTTNVTTPVL
YALGTVTTLFSFTIILVALAIMTMLSRRQAKIN

Sequences:

>Translated_273_residues
MNHEKRGLEFYLLAIFFAVFVLFLYGPLSAVLILSFQGSDGGLTFPMNGVSTHWFFNLFEKQAVGDFGASFRRSFSLGLM
VMVVTVTVSLLAGLAFRRRFRGSTVLFYATVASLVVPSIIVSLGIGVVFQEGGLKPAWYSSAFGAHLTWTLPFGVLIMFA
VFNRFSPAYEEAARDLGASAWQTFRHVVLPMIAPSLIGVGLFGFTLSYDEFARTLMTSGTYNTLPLEIYGMTTNVTTPVL
YALGTVTTLFSFTIILVALAIMTMLSRRQAKIN
>Mature_273_residues
MNHEKRGLEFYLLAIFFAVFVLFLYGPLSAVLILSFQGSDGGLTFPMNGVSTHWFFNLFEKQAVGDFGASFRRSFSLGLM
VMVVTVTVSLLAGLAFRRRFRGSTVLFYATVASLVVPSIIVSLGIGVVFQEGGLKPAWYSSAFGAHLTWTLPFGVLIMFA
VFNRFSPAYEEAARDLGASAWQTFRHVVLPMIAPSLIGVGLFGFTLSYDEFARTLMTSGTYNTLPLEIYGMTTNVTTPVL
YALGTVTTLFSFTIILVALAIMTMLSRRQAKIN

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=225, Percent_Identity=29.7777777777778, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787368, Length=241, Percent_Identity=26.9709543568465, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787081, Length=232, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788764, Length=143, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30012; Mature: 30012

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHEKRGLEFYLLAIFFAVFVLFLYGPLSAVLILSFQGSDGGLTFPMNGVSTHWFFNLFE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCCCCHHHHHHHHH
KQAVGDFGASFRRSFSLGLMVMVVTVTVSLLAGLAFRRRFRGSTVLFYATVASLVVPSII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VSLGIGVVFQEGGLKPAWYSSAFGAHLTWTLPFGVLIMFAVFNRFSPAYEEAARDLGASA
HHHHHHHEEECCCCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
WQTFRHVVLPMIAPSLIGVGLFGFTLSYDEFARTLMTSGTYNTLPLEIYGMTTNVTTPVL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHH
YALGTVTTLFSFTIILVALAIMTMLSRRQAKIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNHEKRGLEFYLLAIFFAVFVLFLYGPLSAVLILSFQGSDGGLTFPMNGVSTHWFFNLFE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECCCCCCCHHHHHHHHH
KQAVGDFGASFRRSFSLGLMVMVVTVTVSLLAGLAFRRRFRGSTVLFYATVASLVVPSII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VSLGIGVVFQEGGLKPAWYSSAFGAHLTWTLPFGVLIMFAVFNRFSPAYEEAARDLGASA
HHHHHHHEEECCCCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
WQTFRHVVLPMIAPSLIGVGLFGFTLSYDEFARTLMTSGTYNTLPLEIYGMTTNVTTPVL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHH
YALGTVTTLFSFTIILVALAIMTMLSRRQAKIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]