| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is yjjK [C]
Identifier: 209550200
GI number: 209550200
Start: 2663710
End: 2665359
Strand: Reverse
Name: yjjK [C]
Synonym: Rleg2_2620
Alternate gene names: 209550200
Gene position: 2665359-2663710 (Counterclockwise)
Preceding gene: 209550201
Following gene: 209550199
Centisome position: 58.73
GC content: 61.15
Gene sequence:
>1650_bases ATGGCACGTCAGTTCATCTATCATATGTCCGGCCTCAACAAGGCCTACGGCAACAAGAAGATCCTGGAGAACATCCACCT TTCCTTCTACCCGGATGCCAAGATCGGTATTCTCGGGCCAAACGGCGCCGGTAAATCCACTGTGCTGCGCATCATCGCCG GCCAGGACAAGGAATATACCGGCGAAGCCTGGCTCGCCGAAGGAGCGACGGTCGGCTACCTCGAGCAGGAGCCGCACATC GATCCCAATAAGACGGTGTTCGAAAACGTCATGGAAGGCGTTGCCTCGAAGACGGCCGTGCTCGAGCGTTACAATGAACT GATGATGAACTATTCCGACGAGACGGCGGAAGAGGGAGCCAAGCTTCAGGACATCATCGACAGCCAGAACCTCTGGGATC TGGAAAGCCAGGTCGAGATGGCGATGGAAGCCTTGCGCTGCCCGCCGCGCGATGCCGATGTCACCAGCCTGTCCGGCGGC GAGCGCCGCCGTATCGCGCTCTGCCGCCTGCTGCTGTCGCAGCCGGACCTGCTGCTGCTCGACGAACCGACCAACCACCT CGACGCCGAGACGATCGCCTGGCTCGAAAAGCATCTGCGCGACTATCCGGGCGCCGTGATGATGATCACCCACGATCGCT ACTTCCTGGACAACGTCACCGGCTGGATCCTCGAACTCGACCGCGGCCGCGGCATTCCCTACGAAGGCAATTACTCGGCC TACCTGCTCGCCAAGGCCAAGCGCATGCAGCAGGAAAACCGGGAAGAGGCCGGCCGCCAGAAGGCGATCAGCCGCGAACA GGAATGGATCGCCTCCAGCCCGAAGGCGCGTCAGGCAAAATCCAAGGCGCGTATCAAGTCTTACGAACAATTGGTGGAGG CGGCCGAAAAGCAGCGTCCCGGCGACGCGCAGATCATCATCCCGGTCAGCGAGCGCTTGGGACAGGTGGTCATCGAGATG GAAGGCATCACCAAGGGCTTCGAGGGCCGCACGCTGATCAACGACCTGTCGATCAAGCTGCCGCCGGGCGGCATCGTCGG CATTATCGGCCCGAACGGTGCCGGCAAGACGACGCTGTTCCGCATGATCACCGGCCAGGAAAAGCCGGACGCCGGATCGG TCCGCATCGGTGAAACGGTGCATCTCGGTTATGTCGACCAGAGCCGCGATGCGCTTGACGGCAGCAAGACCGTCTGGGAG GAAATCTCGGGCGGCGCCGAAATCATCAAGCTCGGCAAGTTCGATATGAACTCCAGAGCCTATTGCGGCGCTTTCAACTT CAAGGGCGGCGACCAGCAGCAGAAGGTCGGCAATCTCTCGGGCGGCCAGCGCAACCGTGTTCACCTTGCCAAGATGCTGA AGGCCGGCGGCAACGTGCTGCTGCTCGACGAACCGACCAACGACCTCGATACGGAAACCCTCGGTGCACTGGAAAGCGCG CTTGAGGCGTTTGCCGGATGCGCCATCATCATCAGCCACGATCGCATGTTCCTCGACCGTCTGGCGACGCACATCCTGGC CTTCGAAGGCGAAGGTCATGTCGAATGGTTCGAAGGCAACTTCGAGGATTATGAGCAGGACAAGGTGCGCCGTCTTGGTC CCGATGCCCTCAATCCGGGCAGCCAGGCTCATAAGCGCCTGACGCGCTGA
Upstream 100 bases:
>100_bases GACCGGAAATCCTGCGTAAACCGGGTTTCGGCGTTGCCCGCAGGCGCTGTTTCGCCTACATAGCGGCACAATCGAAGTTT CCCGCCCGGAGCAGCGCAGC
Downstream 100 bases:
>100_bases TCGCAGCCATTTTTGCAGTCACGAAGCCCCGGTTTCGACCGGGGCTTTTTCACGCCTGGCCTGTCGCAATTTGAGCAGGC AATTTCGCTCAAGTGCGAAT
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 549; Mature: 548
Protein sequence:
>549_residues MARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLRIIAGQDKEYTGEAWLAEGATVGYLEQEPHI DPNKTVFENVMEGVASKTAVLERYNELMMNYSDETAEEGAKLQDIIDSQNLWDLESQVEMAMEALRCPPRDADVTSLSGG ERRRIALCRLLLSQPDLLLLDEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDNVTGWILELDRGRGIPYEGNYSA YLLAKAKRMQQENREEAGRQKAISREQEWIASSPKARQAKSKARIKSYEQLVEAAEKQRPGDAQIIIPVSERLGQVVIEM EGITKGFEGRTLINDLSIKLPPGGIVGIIGPNGAGKTTLFRMITGQEKPDAGSVRIGETVHLGYVDQSRDALDGSKTVWE EISGGAEIIKLGKFDMNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLLDEPTNDLDTETLGALESA LEAFAGCAIIISHDRMFLDRLATHILAFEGEGHVEWFEGNFEDYEQDKVRRLGPDALNPGSQAHKRLTR
Sequences:
>Translated_549_residues MARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLRIIAGQDKEYTGEAWLAEGATVGYLEQEPHI DPNKTVFENVMEGVASKTAVLERYNELMMNYSDETAEEGAKLQDIIDSQNLWDLESQVEMAMEALRCPPRDADVTSLSGG ERRRIALCRLLLSQPDLLLLDEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDNVTGWILELDRGRGIPYEGNYSA YLLAKAKRMQQENREEAGRQKAISREQEWIASSPKARQAKSKARIKSYEQLVEAAEKQRPGDAQIIIPVSERLGQVVIEM EGITKGFEGRTLINDLSIKLPPGGIVGIIGPNGAGKTTLFRMITGQEKPDAGSVRIGETVHLGYVDQSRDALDGSKTVWE EISGGAEIIKLGKFDMNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLLDEPTNDLDTETLGALESA LEAFAGCAIIISHDRMFLDRLATHILAFEGEGHVEWFEGNFEDYEQDKVRRLGPDALNPGSQAHKRLTR >Mature_548_residues ARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLRIIAGQDKEYTGEAWLAEGATVGYLEQEPHID PNKTVFENVMEGVASKTAVLERYNELMMNYSDETAEEGAKLQDIIDSQNLWDLESQVEMAMEALRCPPRDADVTSLSGGE RRRIALCRLLLSQPDLLLLDEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDNVTGWILELDRGRGIPYEGNYSAY LLAKAKRMQQENREEAGRQKAISREQEWIASSPKARQAKSKARIKSYEQLVEAAEKQRPGDAQIIIPVSERLGQVVIEME GITKGFEGRTLINDLSIKLPPGGIVGIIGPNGAGKTTLFRMITGQEKPDAGSVRIGETVHLGYVDQSRDALDGSKTVWEE ISGGAEIIKLGKFDMNSRAYCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLLDEPTNDLDTETLGALESAL EAFAGCAIIISHDRMFLDRLATHILAFEGEGHVEWFEGNFEDYEQDKVRRLGPDALNPGSQAHKRLTR
Specific function: Probably part of an ABC transporter complex. Probably responsible for energy coupling to the transport system [H]
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=550, Percent_Identity=27.8181818181818, Blast_Score=201, Evalue=2e-51, Organism=Homo sapiens, GI27881506, Length=523, Percent_Identity=28.4894837476099, Blast_Score=182, Evalue=6e-46, Organism=Homo sapiens, GI10947137, Length=523, Percent_Identity=28.4894837476099, Blast_Score=182, Evalue=8e-46, Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=27.6243093922652, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=27.6243093922652, Blast_Score=176, Evalue=7e-44, Organism=Homo sapiens, GI30795238, Length=183, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI27881501, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI156105685, Length=222, Percent_Identity=29.2792792792793, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=55.877034358047, Blast_Score=625, Evalue=1e-180, Organism=Escherichia coli, GI1787182, Length=524, Percent_Identity=34.7328244274809, Blast_Score=326, Evalue=2e-90, Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=31.3320825515947, Blast_Score=250, Evalue=1e-67, Organism=Escherichia coli, GI1789751, Length=529, Percent_Identity=30.2457466918715, Blast_Score=249, Evalue=4e-67, Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=30.1652892561983, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI48994943, Length=478, Percent_Identity=22.3849372384937, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI87081782, Length=538, Percent_Identity=23.2342007434944, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081709, Length=192, Percent_Identity=29.6875, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1788761, Length=201, Percent_Identity=31.3432835820896, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=29.2181069958848, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI87081791, Length=195, Percent_Identity=31.7948717948718, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1789593, Length=216, Percent_Identity=30.0925925925926, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1789891, Length=231, Percent_Identity=26.4069264069264, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1790467, Length=244, Percent_Identity=27.4590163934426, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=29.6, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1787370, Length=193, Percent_Identity=27.979274611399, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=30.1369863013699, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI48995001, Length=231, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=26.0089686098655, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1786345, Length=211, Percent_Identity=27.4881516587678, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=25.4166666666667, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=203, Percent_Identity=27.0935960591133, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=200, Percent_Identity=26.5, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1790525, Length=238, Percent_Identity=25.2100840336134, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=28.5, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1789864, Length=248, Percent_Identity=27.0161290322581, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787758, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=26.9230769230769, Blast_Score=214, Evalue=9e-56, Organism=Caenorhabditis elegans, GI17553372, Length=548, Percent_Identity=28.2846715328467, Blast_Score=201, Evalue=1e-51, Organism=Caenorhabditis elegans, GI17555318, Length=551, Percent_Identity=26.3157894736842, Blast_Score=176, Evalue=3e-44, Organism=Caenorhabditis elegans, GI17555800, Length=494, Percent_Identity=24.0890688259109, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17510237, Length=242, Percent_Identity=26.0330578512397, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6321121, Length=552, Percent_Identity=30.0724637681159, Blast_Score=214, Evalue=4e-56, Organism=Saccharomyces cerevisiae, GI6320874, Length=532, Percent_Identity=28.3834586466165, Blast_Score=191, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6323278, Length=382, Percent_Identity=28.0104712041885, Blast_Score=124, Evalue=3e-29, Organism=Saccharomyces cerevisiae, GI6324314, Length=376, Percent_Identity=26.5957446808511, Blast_Score=117, Evalue=4e-27, Organism=Saccharomyces cerevisiae, GI6325030, Length=381, Percent_Identity=27.2965879265092, Blast_Score=117, Evalue=6e-27, Organism=Saccharomyces cerevisiae, GI6320266, Length=530, Percent_Identity=22.8301886792453, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI24666836, Length=547, Percent_Identity=31.0786106032907, Blast_Score=228, Evalue=8e-60, Organism=Drosophila melanogaster, GI24641342, Length=535, Percent_Identity=28.0373831775701, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI24642252, Length=546, Percent_Identity=27.1062271062271, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI18859989, Length=546, Percent_Identity=27.1062271062271, Blast_Score=193, Evalue=2e-49, Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR007406 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 60914; Mature: 60783
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLRIIAGQDKEYT CCCHHHHHHHCCHHHHCCHHHHHHCCEEEECCCEEEEECCCCCCHHHEEEEEECCCCCCC GEAWLAEGATVGYLEQEPHIDPNKTVFENVMEGVASKTAVLERYNELMMNYSDETAEEGA CCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC KLQDIIDSQNLWDLESQVEMAMEALRCPPRDADVTSLSGGERRRIALCRLLLSQPDLLLL HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE DEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDNVTGWILELDRGRGIPYEGNYSA ECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCCCE YLLAKAKRMQQENREEAGRQKAISREQEWIASSPKARQAKSKARIKSYEQLVEAAEKQRP EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GDAQIIIPVSERLGQVVIEMEGITKGFEGRTLINDLSIKLPPGGIVGIIGPNGAGKTTLF CCCEEEEECHHHHCEEEEEECCCCCCCCCCEEEECCEEEECCCCEEEEECCCCCCCHHEE RMITGQEKPDAGSVRIGETVHLGYVDQSRDALDGSKTVWEEISGGAEIIKLGKFDMNSRA EECCCCCCCCCCCEEECCEEEEEECCCCCHHCCCHHHHHHHHCCCCEEEEECCCCCCCCE YCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLLDEPTNDLDTETLGALESA EEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH LEAFAGCAIIISHDRMFLDRLATHILAFEGEGHVEWFEGNFEDYEQDKVRRLGPDALNPG HHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCC SQAHKRLTR HHHHHHCCC >Mature Secondary Structure ARQFIYHMSGLNKAYGNKKILENIHLSFYPDAKIGILGPNGAGKSTVLRIIAGQDKEYT CCHHHHHHHCCHHHHCCHHHHHHCCEEEECCCEEEEECCCCCCHHHEEEEEECCCCCCC GEAWLAEGATVGYLEQEPHIDPNKTVFENVMEGVASKTAVLERYNELMMNYSDETAEEGA CCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC KLQDIIDSQNLWDLESQVEMAMEALRCPPRDADVTSLSGGERRRIALCRLLLSQPDLLLL HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE DEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDNVTGWILELDRGRGIPYEGNYSA ECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCCCE YLLAKAKRMQQENREEAGRQKAISREQEWIASSPKARQAKSKARIKSYEQLVEAAEKQRP EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC GDAQIIIPVSERLGQVVIEMEGITKGFEGRTLINDLSIKLPPGGIVGIIGPNGAGKTTLF CCCEEEEECHHHHCEEEEEECCCCCCCCCCEEEECCEEEECCCCEEEEECCCCCCCHHEE RMITGQEKPDAGSVRIGETVHLGYVDQSRDALDGSKTVWEEISGGAEIIKLGKFDMNSRA EECCCCCCCCCCCEEECCEEEEEECCCCCHHCCCHHHHHHHHCCCCEEEEECCCCCCCCE YCGAFNFKGGDQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLLDEPTNDLDTETLGALESA EEEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH LEAFAGCAIIISHDRMFLDRLATHILAFEGEGHVEWFEGNFEDYEQDKVRRLGPDALNPG HHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCC SQAHKRLTR HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]