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The map label for this gene is cspC [H]

Identifier: 209549797

GI number: 209549797

Start: 2268365

End: 2268577

Strand: Direct

Name: cspC [H]

Synonym: Rleg2_2208

Alternate gene names: 209549797

Gene position: 2268365-2268577 (Clockwise)

Preceding gene: 209549796

Following gene: 209549798

Centisome position: 49.99

GC content: 59.15

Gene sequence:

>213_bases
ATGGCCACCAAGGGCACCGTAAAATTCTTCAACCAGGACAAGGGTTTTGGTTTCATCACGCCGGACGGCGGCGCAAAGGA
CGTTTTCGTCCATATCTCTGCGCTGCAGGCTTCCGGCATCCAGTCGCTGCGCGAAGGCCAGCAGGTTACCTTCGACACCG
AGCCGGACCGCATGGGCAAGGGCCCCAAGGCTGTCAACATCTCGGCTTCGTAA

Upstream 100 bases:

>100_bases
ACTGACCCTTCGTCCCAATCGATCGGGGCGAAAGCTAAAGCCGTCCGCTTCCTCTCGGGGGCGCGGATACTACACAGACT
AAGGGAAAAGGACGATCCCA

Downstream 100 bases:

>100_bases
GTCAGACTTCCGCTTCGGCGGCATGAACGGCGCTCCGCAAGGGGCGCCGTTTCTGTTTGCGGCGCGAACGCCATTTGTCG
ATCGCACTGCCAGATGTTAT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MATKGTVKFFNQDKGFGFITPDGGAKDVFVHISALQASGIQSLREGQQVTFDTEPDRMGKGPKAVNISAS

Sequences:

>Translated_70_residues
MATKGTVKFFNQDKGFGFITPDGGAKDVFVHISALQASGIQSLREGQQVTFDTEPDRMGKGPKAVNISAS
>Mature_69_residues
ATKGTVKFFNQDKGFGFITPDGGAKDVFVHISALQASGIQSLREGQQVTFDTEPDRMGKGPKAVNISAS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=57.5757575757576, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=60, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=57.5757575757576, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=53.968253968254, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=57.1428571428571, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=53.8461538461538, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=49.2307692307692, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7431; Mature: 7300

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKGTVKFFNQDKGFGFITPDGGAKDVFVHISALQASGIQSLREGQQVTFDTEPDRMGK
CCCCCCEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHCCCEEEECCCCHHCCC
GPKAVNISAS
CCCEEEEECC
>Mature Secondary Structure 
ATKGTVKFFNQDKGFGFITPDGGAKDVFVHISALQASGIQSLREGQQVTFDTEPDRMGK
CCCCCEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHCCCEEEECCCCHHCCC
GPKAVNISAS
CCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]