Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 209549669

GI number: 209549669

Start: 2136994

End: 2137482

Strand: Reverse

Name: ybaO [H]

Synonym: Rleg2_2076

Alternate gene names: 209549669

Gene position: 2137482-2136994 (Counterclockwise)

Preceding gene: 209549670

Following gene: 209549668

Centisome position: 47.1

GC content: 54.81

Gene sequence:

>489_bases
ATGGACCGCCTCGACCGAAAAATACTACGTCTGCTGCAAGAAGATTCGACCCTTGCCGTGGCCGATCTTGCCAAAAAAGT
CGGGCTTTCGACGACGCCATGCTGGCGGCGCATCCAGAAAATGGAAGAAGACGGCGTCATCAAGCGCCGCGTCGCCATCC
TCGATCCGGAGAAGGTCAACACCAAGGTTACGGTCTTCGTGTCAATTCGCACGGCCACCCATTCGATCGAATGGCTGCGG
CGCTTTTCCGAAGTGGTCGCCGAATTCCCTGAGGTGGTGGAATTTTACCGGATGAGCGGGGATGTCGACTATCTCTTGCG
AGTCGTTGTGCCCGATATCGCCGCTTATGACGCCTTTTATAAGCGGATGATCGCCAAGATCGAGATTCGCGACGTCTCCT
CCGCCTTTGCGATGGAGCAGATCAAGTATTCGACGCAGCTGCCGCTCGATTACATGATTCTCGACAATGCCAAATCCAAC
GAGGATTGA

Upstream 100 bases:

>100_bases
GCAGGATCGCACGAAAATGCTGCTTTCCTGAAACAAAATTCTTTTCGTGGTGCGGAATCGCGTTATACAAAGAAAATAAT
TCGAAAGGACTGTTGCTCGC

Downstream 100 bases:

>100_bases
AATCGCCGTGCGGCCTTGCGGCCGCACGGTCCAAAGACGCGAAGATTGTGCTGTCTCGGTCGATTCGGCCACATTCTGAT
TGTACCGATCGGGCAAGGGT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MDRLDRKILRLLQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIKRRVAILDPEKVNTKVTVFVSIRTATHSIEWLR
RFSEVVAEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRMIAKIEIRDVSSAFAMEQIKYSTQLPLDYMILDNAKSN
ED

Sequences:

>Translated_162_residues
MDRLDRKILRLLQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIKRRVAILDPEKVNTKVTVFVSIRTATHSIEWLR
RFSEVVAEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRMIAKIEIRDVSSAFAMEQIKYSTQLPLDYMILDNAKSN
ED
>Mature_162_residues
MDRLDRKILRLLQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIKRRVAILDPEKVNTKVTVFVSIRTATHSIEWLR
RFSEVVAEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRMIAKIEIRDVSSAFAMEQIKYSTQLPLDYMILDNAKSN
ED

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=52.317880794702, Blast_Score=178, Evalue=2e-46,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=34.4594594594595, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18780; Mature: 18780

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDRKILRLLQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIKRRVAILDPEKVN
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHEECCCCCC
TKVTVFVSIRTATHSIEWLRRFSEVVAEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFY
CEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KRMIAKIEIRDVSSAFAMEQIKYSTQLPLDYMILDNAKSNED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MDRLDRKILRLLQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIKRRVAILDPEKVN
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHEECCCCCC
TKVTVFVSIRTATHSIEWLRRFSEVVAEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFY
CEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KRMIAKIEIRDVSSAFAMEQIKYSTQLPLDYMILDNAKSNED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]