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The map label for this gene is rssA [H]

Identifier: 209549445

GI number: 209549445

Start: 1899167

End: 1900129

Strand: Direct

Name: rssA [H]

Synonym: Rleg2_1851

Alternate gene names: 209549445

Gene position: 1899167-1900129 (Clockwise)

Preceding gene: 209549444

Following gene: 209549448

Centisome position: 41.85

GC content: 63.55

Gene sequence:

>963_bases
ATGCTGAGCTGGAATTTGCATCGTCAAAGCTCTGAAGGCGAAGGTTCCGGTTCCGGCATGTCGACCACACTTGAGACGAT
CCCGCCTCCCGCACCCGTCAAGAGAATCAAGATCGCGCTGGCGCTCGGCGGTGGAGCGGCCCGCGGCTGGGCCCATATCG
GCGTGCTGCGCGCCCTCGACGAGGCAAAAATCGAGATCGGCATGATTGCCGGCACCTCGATCGGCGCGCTGGTCGGCGGC
TGCTATCTCGCCGGTAAACTCGATGAGCTCGAAAGTTTTGCCCGCTCGCTGACCATGCGCCGGATTGCCAGTCTCCTCGA
TCTCACCATTGGCGGCAGTGGCCTGTTCGGCGGCATGCGGCTGACCAAGCGCATGCAGGAACATCTCGAAGGCCTGAACG
TCGAGGATCTCGACCGGCCCTTCGTCGCCGTCGCCGCCGAGGTCAATACCGGCCACGAGGTGTGGATCGCCAATGGTTCG
CTGATCACGGCGCTGCGCGCCTCCTATGCCCTGCCCGGCATTTTCGAGCCGGTGCGCAGCAATCACCGCACGCTGGTCGA
CGGCGCATTGGTCAACCCCGTTCCCGTCTCCGTTTGCCGCGCCTACGAGCAGCCGCTCGTCGTCGCCGTCAATCTCAATT
ACGATCTTTATGGCCGCTCGGCGGTTGTCCGGCACAATGCCAGCCTCTCGCCGCAGGAAGTGCAGAAGCAGGAAGAGGCG
CCCTATGCCCGTCTCGGCATGACCGGCGTCATGGTGCAGGCTTTCAATATCATCCAGGACAGGATCGCCCGCGCCCGCCT
TGCCGGCGACCCGCCGGATATTTCGCTGCAGCCGCGTCTGAGTTATATCGGCCTTTCCGAGTTCCATCGGGCCGGCGAAG
CGATCGAACGCGGCTATGAGGAAGCCAGAGCCAGGCTCCCCGAAATCAAGCGCATGCAGGAAGTCTACGCCAGCTCCCCC
TGA

Upstream 100 bases:

>100_bases
TCTGCTCCTTATTGCGCCAGAAGTCGCCTCTATATACCATTTGGAAACTGATCGGGCACACTATCGGAAACCATGTGTTC
TGCTGGGAGGGGAGAGCGCC

Downstream 100 bases:

>100_bases
TCGACATTATTCGCAAGCCCGTAGCCGTTTCGCGGGCTACGGCATCCCTCGAAAGAGGGCGAAAACCTCAGCCGGCGATA
TAGGCTTTGATTTCCTCGGC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLSWNLHRQSSEGEGSGSGMSTTLETIPPPAPVKRIKIALALGGGAARGWAHIGVLRALDEAKIEIGMIAGTSIGALVGG
CYLAGKLDELESFARSLTMRRIASLLDLTIGGSGLFGGMRLTKRMQEHLEGLNVEDLDRPFVAVAAEVNTGHEVWIANGS
LITALRASYALPGIFEPVRSNHRTLVDGALVNPVPVSVCRAYEQPLVVAVNLNYDLYGRSAVVRHNASLSPQEVQKQEEA
PYARLGMTGVMVQAFNIIQDRIARARLAGDPPDISLQPRLSYIGLSEFHRAGEAIERGYEEARARLPEIKRMQEVYASSP

Sequences:

>Translated_320_residues
MLSWNLHRQSSEGEGSGSGMSTTLETIPPPAPVKRIKIALALGGGAARGWAHIGVLRALDEAKIEIGMIAGTSIGALVGG
CYLAGKLDELESFARSLTMRRIASLLDLTIGGSGLFGGMRLTKRMQEHLEGLNVEDLDRPFVAVAAEVNTGHEVWIANGS
LITALRASYALPGIFEPVRSNHRTLVDGALVNPVPVSVCRAYEQPLVVAVNLNYDLYGRSAVVRHNASLSPQEVQKQEEA
PYARLGMTGVMVQAFNIIQDRIARARLAGDPPDISLQPRLSYIGLSEFHRAGEAIERGYEEARARLPEIKRMQEVYASSP
>Mature_320_residues
MLSWNLHRQSSEGEGSGSGMSTTLETIPPPAPVKRIKIALALGGGAARGWAHIGVLRALDEAKIEIGMIAGTSIGALVGG
CYLAGKLDELESFARSLTMRRIASLLDLTIGGSGLFGGMRLTKRMQEHLEGLNVEDLDRPFVAVAAEVNTGHEVWIANGS
LITALRASYALPGIFEPVRSNHRTLVDGALVNPVPVSVCRAYEQPLVVAVNLNYDLYGRSAVVRHNASLSPQEVQKQEEA
PYARLGMTGVMVQAFNIIQDRIARARLAGDPPDISLQPRLSYIGLSEFHRAGEAIERGYEEARARLPEIKRMQEVYASSP

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI148727335, Length=282, Percent_Identity=29.0780141843972, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI148727290, Length=183, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI226510936, Length=295, Percent_Identity=37.2881355932203, Blast_Score=196, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI193204778, Length=166, Percent_Identity=28.9156626506024, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997289, Length=165, Percent_Identity=31.5151515151515, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997299, Length=165, Percent_Identity=31.5151515151515, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323581, Length=180, Percent_Identity=31.1111111111111, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281376913, Length=304, Percent_Identity=26.9736842105263, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571388, Length=304, Percent_Identity=26.6447368421053, Blast_Score=78, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 34560; Mature: 34560

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSWNLHRQSSEGEGSGSGMSTTLETIPPPAPVKRIKIALALGGGAARGWAHIGVLRALD
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHH
EAKIEIGMIAGTSIGALVGGCYLAGKLDELESFARSLTMRRIASLLDLTIGGSGLFGGMR
HCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LTKRMQEHLEGLNVEDLDRPFVAVAAEVNTGHEVWIANGSLITALRASYALPGIFEPVRS
HHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHC
NHRTLVDGALVNPVPVSVCRAYEQPLVVAVNLNYDLYGRSAVVRHNASLSPQEVQKQEEA
CCCEEECCCCCCCCHHHHHHHCCCCEEEEEECCEEECCCCEEEECCCCCCHHHHHHHHCC
PYARLGMTGVMVQAFNIIQDRIARARLAGDPPDISLQPRLSYIGLSEFHRAGEAIERGYE
CHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
EARARLPEIKRMQEVYASSP
HHHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSWNLHRQSSEGEGSGSGMSTTLETIPPPAPVKRIKIALALGGGAARGWAHIGVLRALD
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHH
EAKIEIGMIAGTSIGALVGGCYLAGKLDELESFARSLTMRRIASLLDLTIGGSGLFGGMR
HCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LTKRMQEHLEGLNVEDLDRPFVAVAAEVNTGHEVWIANGSLITALRASYALPGIFEPVRS
HHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHC
NHRTLVDGALVNPVPVSVCRAYEQPLVVAVNLNYDLYGRSAVVRHNASLSPQEVQKQEEA
CCCEEECCCCCCCCHHHHHHHCCCCEEEEEECCEEECCCCEEEECCCCCCHHHHHHHHCC
PYARLGMTGVMVQAFNIIQDRIARARLAGDPPDISLQPRLSYIGLSEFHRAGEAIERGYE
CHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
EARARLPEIKRMQEVYASSP
HHHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]