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The map label for this gene is radC [C]

Identifier: 209549111

GI number: 209549111

Start: 1543626

End: 1544453

Strand: Reverse

Name: radC [C]

Synonym: Rleg2_1511

Alternate gene names: 209549111

Gene position: 1544453-1543626 (Counterclockwise)

Preceding gene: 209549112

Following gene: 209549110

Centisome position: 34.03

GC content: 63.89

Gene sequence:

>828_bases
ATGGCGAAGAGGCCGGTTGCGACATCTTCCGACGACGAGTTGCCTTTCGAGATCGAAGAGCCTGTTGCCGCCGACGAACG
CGCGTTCTTCGGCGGGCAGCCGCAAAAACCCGCCGCGGCGAATGCCAAGGCCGCCCTGCCCGCTTCGCTCGCCGCTCAGG
AGCATTATCACGGCCATCGCGAGCGGCTGCGCGATCGCTTCCGCGAACAGGGCGACACCGCCCTTGCCGACTATGAAATT
CTCGAACTCCTGCTTTTTCGCCTGATCCCGCGGCGCGACACCAAGCCGATCGCCAAGGCACTGATCGAACGCTTCGGCTC
GCTCGCCGGCGTCTTCGGCGCCCCGGCGGCGCTGCTGACGGAGGTAAAGGGTGTCGGCGAGGCCGTGGCGCTCGACCTGA
AGCTGATTTCGACCGTCGCCCACCGGACGCTGAAGAGCGAACTCAGGAGCAAGCAGGTGCTGTCCTCGTGGTCCTCGGTC
ATCCAGTATTGCCATGCCGCCATGGCGCATGAGACGCGCGAACAATTCCGCATCCTGTTCCTCGACAAACGCAACGTGCT
TATCGCCGACGAGGTGCAGGGCCGCGGCACGGTCGACCATACGCCGGTCTATCCGCGCGAGGTGGTCAAACGCGCGCTCG
AGCTTTCGGCAACGGCGATGATCCTCGTCCACAACCACCCCTCCGGTGACCCGACGCCGTCACGCGCCGACATCGACATG
ACGAAGGTGATCATCGAGGCAGCCAAGGCGCTCGATATCACCGTCCACGACCACGTCATCATCGGCAAAGATGGCCATGT
CAGCCTGAAGGGGCTGAAGTTGATCTGA

Upstream 100 bases:

>100_bases
CACACCGTCGGCGTCACCTCCGACGGCTGCGAGATCTTCACTCTGTCGCCCGGCGGGCTCGACCGCCCCGGCCTGCCATC
GCTTGCCGGGTGACGATCCG

Downstream 100 bases:

>100_bases
AGCCGTCGCGCGCTGACATCGATTTGACGATGGTGATCATCGACGCGGCGAATGCGTTTGATATCATCGTCCATGACCAC
ATCATCAACGGCGATGTCGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MAKRPVATSSDDELPFEIEEPVAADERAFFGGQPQKPAAANAKAALPASLAAQEHYHGHRERLRDRFREQGDTALADYEI
LELLLFRLIPRRDTKPIAKALIERFGSLAGVFGAPAALLTEVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSV
IQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDM
TKVIIEAAKALDITVHDHVIIGKDGHVSLKGLKLI

Sequences:

>Translated_275_residues
MAKRPVATSSDDELPFEIEEPVAADERAFFGGQPQKPAAANAKAALPASLAAQEHYHGHRERLRDRFREQGDTALADYEI
LELLLFRLIPRRDTKPIAKALIERFGSLAGVFGAPAALLTEVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSV
IQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDM
TKVIIEAAKALDITVHDHVIIGKDGHVSLKGLKLI
>Mature_274_residues
AKRPVATSSDDELPFEIEEPVAADERAFFGGQPQKPAAANAKAALPASLAAQEHYHGHRERLRDRFREQGDTALADYEIL
ELLLFRLIPRRDTKPIAKALIERFGSLAGVFGAPAALLTEVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSVI
QYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDMT
KVIIEAAKALDITVHDHVIIGKDGHVSLKGLKLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=34.4660194174757, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI2367100, Length=138, Percent_Identity=44.9275362318841, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788997, Length=100, Percent_Identity=49, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788312, Length=97, Percent_Identity=49.4845360824742, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1511_RHILW (B5ZMI0)

Other databases:

- EMBL:   CP001191
- RefSeq:   YP_002281028.1
- ProteinModelPortal:   B5ZMI0
- SMR:   B5ZMI0
- GeneID:   6980242
- GenomeReviews:   CP001191_GR
- KEGG:   rlt:Rleg2_1511
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 30232; Mature: 30101

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRPVATSSDDELPFEIEEPVAADERAFFGGQPQKPAAANAKAALPASLAAQEHYHGHR
CCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH
ERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLAGVFGAPAALLT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
EVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSVIQYCHAAMAHETREQFRILF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
LDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDM
EECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHH
TKVIIEAAKALDITVHDHVIIGKDGHVSLKGLKLI
HHHHHHHHHHHEEEEECEEEECCCCCEEECCEECC
>Mature Secondary Structure 
AKRPVATSSDDELPFEIEEPVAADERAFFGGQPQKPAAANAKAALPASLAAQEHYHGHR
CCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH
ERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLAGVFGAPAALLT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
EVKGVGEAVALDLKLISTVAHRTLKSELRSKQVLSSWSSVIQYCHAAMAHETREQFRILF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
LDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDM
EECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHH
TKVIIEAAKALDITVHDHVIIGKDGHVSLKGLKLI
HHHHHHHHHHHEEEEECEEEECCCCCEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA