| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is ykvO [H]
Identifier: 209549028
GI number: 209549028
Start: 1450039
End: 1450815
Strand: Reverse
Name: ykvO [H]
Synonym: Rleg2_1425
Alternate gene names: 209549028
Gene position: 1450815-1450039 (Counterclockwise)
Preceding gene: 209549030
Following gene: 209549023
Centisome position: 31.97
GC content: 64.74
Gene sequence:
>777_bases ATGCGTCTAAGAAACAAGGTCGCCCTGATCACCGGCGGCAACAGCGGTATTGGTCTTGCGACTGCCAAGGTCTTTATCGA CGAGGGTGCAAAGGTCGTGATCACCGGCCGCAATCCCGAAACGCTTGCCGCGGCCGAAAAGGCGCTTGGGGCCGGCGTCG TCGCGCTGAAGGTCGATGTCACCGATGCCGCCGCCACCGAGAAGGCCTTTGCGGAAGCCGCCGCAAAAGTCGGCAAGTTC GATATCGTCTTCGCCAATGCCGGCATTGGCGGCGCGACACCGCTCGGTGACACGTCGCCGGAGCAGTTCAATCAGATCAT CAGCACCAATCTGACGGCCGTCTTCTTCACCGTGCAATCGGCCCTGCCGCATCTCAGCGATGGCGGTTCGGTCATTCTCA ACGGTTCGGTGCACGCGGTGCTCGGCGCGCCCGGCTGGTCGGCCTATGCGGCGACCAAGGCCGCGGTCCGGGCGATGACG CGCAACATGGCCTCCGAACTCGCGCCGCGCGGCATCCGCGTCAATCAGGTGACTCCAGGCGGCACGAAGACGCCGATCTG GTCGCCGATGGCCCAGACGGAAGATGCGATGTCGGCGCTCGAAGCCCGCATCGGCGGCATGAGCCCGCTCGGCCGCATGA GCGAAGCCGACGAAATCGCCAAGGCGGCGCTTTACCTCGCTTCGGATGATTCTGCCAATGTCACCGGCATCGAGATCACC GTCGACGGCGGCATGACGAGCGCCCCGTCCGGCGCCAAGATCTTCCGCGCCGCATAA
Upstream 100 bases:
>100_bases TTCGGCATCATGCTCCTTGACTCAAGTAGATTACAGTCATAATCCTTATAGATAACGATCATAATCCAGATCGTTGCCAT TTCCAAGAGGAGCATGAATC
Downstream 100 bases:
>100_bases GCCAGCAAGGGTCGGACAAGTCGGACTTGCCCGACCCCCGATCAGCCATTCCTCGCGCGGCGGGCCATACGAAACAGCAC GATTGCCAGATTGACGACGG
Product: short-chain dehydrogenase/reductase SDR
Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MRLRNKVALITGGNSGIGLATAKVFIDEGAKVVITGRNPETLAAAEKALGAGVVALKVDVTDAAATEKAFAEAAAKVGKF DIVFANAGIGGATPLGDTSPEQFNQIISTNLTAVFFTVQSALPHLSDGGSVILNGSVHAVLGAPGWSAYAATKAAVRAMT RNMASELAPRGIRVNQVTPGGTKTPIWSPMAQTEDAMSALEARIGGMSPLGRMSEADEIAKAALYLASDDSANVTGIEIT VDGGMTSAPSGAKIFRAA
Sequences:
>Translated_258_residues MRLRNKVALITGGNSGIGLATAKVFIDEGAKVVITGRNPETLAAAEKALGAGVVALKVDVTDAAATEKAFAEAAAKVGKF DIVFANAGIGGATPLGDTSPEQFNQIISTNLTAVFFTVQSALPHLSDGGSVILNGSVHAVLGAPGWSAYAATKAAVRAMT RNMASELAPRGIRVNQVTPGGTKTPIWSPMAQTEDAMSALEARIGGMSPLGRMSEADEIAKAALYLASDDSANVTGIEIT VDGGMTSAPSGAKIFRAA >Mature_258_residues MRLRNKVALITGGNSGIGLATAKVFIDEGAKVVITGRNPETLAAAEKALGAGVVALKVDVTDAAATEKAFAEAAAKVGKF DIVFANAGIGGATPLGDTSPEQFNQIISTNLTAVFFTVQSALPHLSDGGSVILNGSVHAVLGAPGWSAYAATKAAVRAMT RNMASELAPRGIRVNQVTPGGTKTPIWSPMAQTEDAMSALEARIGGMSPLGRMSEADEIAKAALYLASDDSANVTGIEIT VDGGMTSAPSGAKIFRAA
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI10190704, Length=271, Percent_Identity=35.7933579335793, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=30.9803921568627, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=33.6170212765957, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=30.8641975308642, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=32.2709163346614, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=33.2, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.0077519379845, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=35.4497354497354, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=29.3436293436293, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI4758504, Length=261, Percent_Identity=31.0344827586207, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=27.34375, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=32.4022346368715, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=32.9896907216495, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI31542939, Length=271, Percent_Identity=25.0922509225092, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI4503817, Length=223, Percent_Identity=24.6636771300448, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=26.2886597938144, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=28.4, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI83715985, Length=261, Percent_Identity=29.1187739463602, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=26.5560165975104, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI223718074, Length=191, Percent_Identity=30.8900523560209, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=36.4372469635627, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=35.5731225296443, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=33.596837944664, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=33.0677290836653, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=31.7647058823529, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=30.2788844621514, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=32.5301204819277, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=30.9917355371901, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=28.2868525896414, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.5301204819277, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=31.638418079096, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=30, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=29.2682926829268, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=30.1020408163265, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788891, Length=255, Percent_Identity=28.2352941176471, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787545, Length=261, Percent_Identity=28.3524904214559, Blast_Score=72, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=35.6060606060606, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=34.4827586206897, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=35.2, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=32.1138211382114, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560332, Length=280, Percent_Identity=33.5714285714286, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=32.156862745098, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=34.469696969697, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.5589353612167, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=35.3413654618474, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17551412, Length=277, Percent_Identity=32.4909747292419, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=32.0754716981132, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=32.4324324324324, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=32.9501915708812, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=33.2046332046332, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=31.6981132075472, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.4393939393939, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=29.8850574712644, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=31.9391634980989, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=32.4528301886792, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=33.4615384615385, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.203007518797, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=32.5842696629214, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560676, Length=264, Percent_Identity=28.030303030303, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=30.2681992337165, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=28.1368821292776, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.4193548387097, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561272, Length=267, Percent_Identity=30.3370786516854, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=27.6679841897233, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193203115, Length=185, Percent_Identity=30.2702702702703, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=24.8704663212435, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17564282, Length=238, Percent_Identity=28.1512605042017, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6322227, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=198, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=35.3658536585366, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=35.7429718875502, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=34.412955465587, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=34.412955465587, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=33.4677419354839, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=31.1023622047244, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.1285140562249, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI17737361, Length=261, Percent_Identity=30.2681992337165, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644337, Length=244, Percent_Identity=31.9672131147541, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=28.0487804878049, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24641232, Length=240, Percent_Identity=27.5, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007236, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=28.2178217821782, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571387, Length=239, Percent_Identity=27.1966527196653, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24663911, Length=232, Percent_Identity=29.3103448275862, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=26.7676767676768, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281364892, Length=189, Percent_Identity=28.042328042328, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581726, Length=192, Percent_Identity=28.125, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=231, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100 [C]
Molecular weight: Translated: 26141; Mature: 26141
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLRNKVALITGGNSGIGLATAKVFIDEGAKVVITGRNPETLAAAEKALGAGVVALKVDV CCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEC TDAAATEKAFAEAAAKVGKFDIVFANAGIGGATPLGDTSPEQFNQIISTNLTAVFFTVQS CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHEEEEHHH ALPHLSDGGSVILNGSVHAVLGAPGWSAYAATKAAVRAMTRNMASELAPRGIRVNQVTPG HCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC GTKTPIWSPMAQTEDAMSALEARIGGMSPLGRMSEADEIAKAALYLASDDSANVTGIEIT CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCCEEEEEEE VDGGMTSAPSGAKIFRAA ECCCCCCCCCCCEEEECC >Mature Secondary Structure MRLRNKVALITGGNSGIGLATAKVFIDEGAKVVITGRNPETLAAAEKALGAGVVALKVDV CCCCCEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEC TDAAATEKAFAEAAAKVGKFDIVFANAGIGGATPLGDTSPEQFNQIISTNLTAVFFTVQS CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHEEEEHHH ALPHLSDGGSVILNGSVHAVLGAPGWSAYAATKAAVRAMTRNMASELAPRGIRVNQVTPG HCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC GTKTPIWSPMAQTEDAMSALEARIGGMSPLGRMSEADEIAKAALYLASDDSANVTGIEIT CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCCEEEEEEE VDGGMTSAPSGAKIFRAA ECCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]
Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]