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The map label for this gene is 209548561

Identifier: 209548561

GI number: 209548561

Start: 983899

End: 985140

Strand: Reverse

Name: 209548561

Synonym: Rleg2_0958

Alternate gene names: NA

Gene position: 985140-983899 (Counterclockwise)

Preceding gene: 209548562

Following gene: 209548559

Centisome position: 21.71

GC content: 65.06

Gene sequence:

>1242_bases
TTGGAAAGCATGATCGAGGAAATCTACCGATCGCAATCGCGCCGGGTTCTGGCGACGCTGATCCGTCTGCTCGGCGATTT
CGACCGTGCCGAGGAAGCGCTGCACGACGCCTTTGCCGCGGCGGCGCGGACCTGGCCGGCTGACGGCATTCCCGGCAACC
CTTTCGCCTGGCTCGTTTCGACGGGACGCTTCAAGGCAATCGACACGATCCGGCGGCGGGCGCGTTTCGATGCTTCCCAG
CATCATATCGAGGACAGCCTCTATACGCCCGAAGCAACTTACATCGGCGACATGGAACCGATCGAGGACGATATGCTGCG
GCTGATCTTCACTTGCTGCCACCCCGCCATTCCCGCCGATGCGCAGATGGCAATGGCGCTTCGGGAAATCTGCGGACTGA
CCACCGAAGAAATCGCCCATGCCTTCCTCGTACCGGCACCGACGGTCGCCCAGCGGATCGTGCGCGCCAAAGGCAGGATC
CGGGCGGAGAAGATACCCTATGAAGTGCCGGGCCACGAGGCGCTGCCGCAGCGGCTCGACCAGGTGCTGCACGTGATCTA
CCTCGTCTTCAACGAGGGCTATTCCGCTTCTTCGGGCGAAGACGTGGTCCGTGCCGACCTGACCGCAGAGGCGATACGTC
TGGCGCGGCTGCTTCTGGCGCTGCTGCCGCATCCCGACGCCTCCGGCCTGCTGGCGCTGATGCTGCTGCAGGAGTCCCGC
CGCGCCGCCCGCAGCAGCGAGCGGGGCACGCTGGTGCTGCTTGCCGATCAGGACCGCTCGCTCTGGGATCATGCGAAGAT
TGCGGAAGGTCTGGCGCTGCTTGCCGAAGCCATGAGAGCGGGAGAGGTCGGCAGCTATACGCTGCAGGCGGCGATCGCCG
CGGAGCATGCCAGGGCACCGGTTGCGGAAGAGACCGACTGGCGACGGATCGCCTTCTATTACGATCTGCTTGTGGCGGCC
CAGCCCTCCCCGATCGTCGAACTCAACCGGGCCGTGGCGATCGCGATGGCGGAGGGGCCGGCGAAGGGGCTGGAACTGAT
CGATGCCATTCTGGAACGCCGGGAGCTGCAGACCTATCATCTCGCCCATTCGGCGCGCGCCGATTTCCTGCGCCGCCTCG
GCCGGCGGCAGGAGGCGATCGCAGCTTATGAGAAAGCATTGTCGCTCTGCCAGCAGGAGCCGGAGCAGGCATTTCTCAGA
AAACGGATTTCAGAGCTTGCCGCGACGCCCGAGCGGCAGTGA

Upstream 100 bases:

>100_bases
GAGGCGCGCAAGGTCGTCGCGGGCATTCCAAGCGTCCGCGTCGGATCGGTCGAATTGCGTCCGGTGCGGCTCCTCACCCT
GCCAGAGTGAGGATCGCCCG

Downstream 100 bases:

>100_bases
GATCGCCGTGCCGGTCAACGCCGAGACAATGATCAGCAGGTGGGCGTTGACGCTCGCCTGGGCGAGCGCGGCCAATGCCA
GCCGCTCGCTCGAAGCCCCG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MESMIEEIYRSQSRRVLATLIRLLGDFDRAEEALHDAFAAAARTWPADGIPGNPFAWLVSTGRFKAIDTIRRRARFDASQ
HHIEDSLYTPEATYIGDMEPIEDDMLRLIFTCCHPAIPADAQMAMALREICGLTTEEIAHAFLVPAPTVAQRIVRAKGRI
RAEKIPYEVPGHEALPQRLDQVLHVIYLVFNEGYSASSGEDVVRADLTAEAIRLARLLLALLPHPDASGLLALMLLQESR
RAARSSERGTLVLLADQDRSLWDHAKIAEGLALLAEAMRAGEVGSYTLQAAIAAEHARAPVAEETDWRRIAFYYDLLVAA
QPSPIVELNRAVAIAMAEGPAKGLELIDAILERRELQTYHLAHSARADFLRRLGRRQEAIAAYEKALSLCQQEPEQAFLR
KRISELAATPERQ

Sequences:

>Translated_413_residues
MESMIEEIYRSQSRRVLATLIRLLGDFDRAEEALHDAFAAAARTWPADGIPGNPFAWLVSTGRFKAIDTIRRRARFDASQ
HHIEDSLYTPEATYIGDMEPIEDDMLRLIFTCCHPAIPADAQMAMALREICGLTTEEIAHAFLVPAPTVAQRIVRAKGRI
RAEKIPYEVPGHEALPQRLDQVLHVIYLVFNEGYSASSGEDVVRADLTAEAIRLARLLLALLPHPDASGLLALMLLQESR
RAARSSERGTLVLLADQDRSLWDHAKIAEGLALLAEAMRAGEVGSYTLQAAIAAEHARAPVAEETDWRRIAFYYDLLVAA
QPSPIVELNRAVAIAMAEGPAKGLELIDAILERRELQTYHLAHSARADFLRRLGRRQEAIAAYEKALSLCQQEPEQAFLR
KRISELAATPERQ
>Mature_413_residues
MESMIEEIYRSQSRRVLATLIRLLGDFDRAEEALHDAFAAAARTWPADGIPGNPFAWLVSTGRFKAIDTIRRRARFDASQ
HHIEDSLYTPEATYIGDMEPIEDDMLRLIFTCCHPAIPADAQMAMALREICGLTTEEIAHAFLVPAPTVAQRIVRAKGRI
RAEKIPYEVPGHEALPQRLDQVLHVIYLVFNEGYSASSGEDVVRADLTAEAIRLARLLLALLPHPDASGLLALMLLQESR
RAARSSERGTLVLLADQDRSLWDHAKIAEGLALLAEAMRAGEVGSYTLQAAIAAEHARAPVAEETDWRRIAFYYDLLVAA
QPSPIVELNRAVAIAMAEGPAKGLELIDAILERRELQTYHLAHSARADFLRRLGRRQEAIAAYEKALSLCQQEPEQAFLR
KRISELAATPERQ

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45963; Mature: 45963

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESMIEEIYRSQSRRVLATLIRLLGDFDRAEEALHDAFAAAARTWPADGIPGNPFAWLVS
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
TGRFKAIDTIRRRARFDASQHHIEDSLYTPEATYIGDMEPIEDDMLRLIFTCCHPAIPAD
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
AQMAMALREICGLTTEEIAHAFLVPAPTVAQRIVRAKGRIRAEKIPYEVPGHEALPQRLD
HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHH
QVLHVIYLVFNEGYSASSGEDVVRADLTAEAIRLARLLLALLPHPDASGLLALMLLQESR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RAARSSERGTLVLLADQDRSLWDHAKIAEGLALLAEAMRAGEVGSYTLQAAIAAEHARAP
HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
VAEETDWRRIAFYYDLLVAAQPSPIVELNRAVAIAMAEGPAKGLELIDAILERRELQTYH
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHH
LAHSARADFLRRLGRRQEAIAAYEKALSLCQQEPEQAFLRKRISELAATPERQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MESMIEEIYRSQSRRVLATLIRLLGDFDRAEEALHDAFAAAARTWPADGIPGNPFAWLVS
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
TGRFKAIDTIRRRARFDASQHHIEDSLYTPEATYIGDMEPIEDDMLRLIFTCCHPAIPAD
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
AQMAMALREICGLTTEEIAHAFLVPAPTVAQRIVRAKGRIRAEKIPYEVPGHEALPQRLD
HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHH
QVLHVIYLVFNEGYSASSGEDVVRADLTAEAIRLARLLLALLPHPDASGLLALMLLQESR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RAARSSERGTLVLLADQDRSLWDHAKIAEGLALLAEAMRAGEVGSYTLQAAIAAEHARAP
HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
VAEETDWRRIAFYYDLLVAAQPSPIVELNRAVAIAMAEGPAKGLELIDAILERRELQTYH
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHH
LAHSARADFLRRLGRRQEAIAAYEKALSLCQQEPEQAFLRKRISELAATPERQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]