Click here to switch to the map view.

The map label for this gene is ybbO [C]

Identifier: 209548490

GI number: 209548490

Start: 904727

End: 905701

Strand: Direct

Name: ybbO [C]

Synonym: Rleg2_0887

Alternate gene names: 209548490

Gene position: 904727-905701 (Clockwise)

Preceding gene: 209548488

Following gene: 209548491

Centisome position: 19.94

GC content: 61.95

Gene sequence:

>975_bases
ATGTCCACCCCACAGGCTCCCATCGTTTCCGGCTTCGGCGCCGCCTCGACCGCGGCGGAGGTCATCGCCGGGCACGATCT
CTCAGGCAAGGTCGCGATCGTCACCGGCGGTTATTCCGGTCTTGGCTTTGAGACGGCTCGTGTGCTTGCCGAAGCCGGCG
CCAAGGTCATCGTCCCCGCCCGCAATCTCGGCAAAGCCAAGGCTGCCGTGGAAAACATTCCCGGCCTTGCGCTGGAAATG
CTAGACTTGATGGATCCCGGCTCGATCGACGACTTCGCCGACCGCTTTCTTGAAAGCGGTGCGCCATTGCATCTTCTTAT
CAACAATGCCGCCGTGATGGCGAACCCGCTCACGCGCGACGCCCGGGGATATGAGTCCCAATTCTCCACCAATCATCTCG
GCCATTTCCAGCTCGCTGCTCGCCTCTGGCCGGCGCTGGTAAAGGCCGAGGGTGCGCGCGTCGTCGCGGTCTCCTCGCGC
GGTCACGTCTTCTCCGGCGTCGATTTCGACGATCCGAATTTCGAGAACCGTGAGTACGCCCCCTATCTCGCCTATGGCCA
GTCGAAGACGGCAAATGCTCTCTTTGCCGTGTCACTGGACGCTGTGGGGGCGAAGTACGGTATCAGAGCCTTCTCATTGC
ATCCCGGTGGTATCGTCACCACCAATCTGGTCCGTCACCAATCGGGCGAGTTCCTCAAGGCGAGCGGTTATGTCGACGAG
CATGGCCAGCCGGTCATCGATCCGGAAAACAACAAGAAGACGGTAGAGCAGGGGGCGTCGACCACAGTCTGGTGCGCCGT
CAGCGAGAAGCTCGACGGTTTGGGTGGCGTCTATTGCGAGAACTGCAATATCGCCACCGCCGTCCCCGGCGATTCGACCG
AGATGCTCGGTGTCCGTCCTTGGGCAACCGATCCGGAACTCGCCGAGCGCCTCTGGCAGCTGAGCGAGCGGCTGACGGGT
TTCATTGCCAGCTAG

Upstream 100 bases:

>100_bases
CATTTTTTGAACGATGGAGCAGGAAATCCGGATTTGCAAGCATTCAGAATCCCGTTTCGCGGACGTATACAAGGCCATCA
CGCAAGCACGGAGGCAGATC

Downstream 100 bases:

>100_bases
TGGGCGGCCCCACGGCGGCCAGCATAGCTGGCCGCCAAGGTCTGACCTCCGGGCAATCTTTGTTGGCGCATTGCCGCCGC
TGGCCGCCCGGTCTATACCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSTPQAPIVSGFGAASTAAEVIAGHDLSGKVAIVTGGYSGLGFETARVLAEAGAKVIVPARNLGKAKAAVENIPGLALEM
LDLMDPGSIDDFADRFLESGAPLHLLINNAAVMANPLTRDARGYESQFSTNHLGHFQLAARLWPALVKAEGARVVAVSSR
GHVFSGVDFDDPNFENREYAPYLAYGQSKTANALFAVSLDAVGAKYGIRAFSLHPGGIVTTNLVRHQSGEFLKASGYVDE
HGQPVIDPENNKKTVEQGASTTVWCAVSEKLDGLGGVYCENCNIATAVPGDSTEMLGVRPWATDPELAERLWQLSERLTG
FIAS

Sequences:

>Translated_324_residues
MSTPQAPIVSGFGAASTAAEVIAGHDLSGKVAIVTGGYSGLGFETARVLAEAGAKVIVPARNLGKAKAAVENIPGLALEM
LDLMDPGSIDDFADRFLESGAPLHLLINNAAVMANPLTRDARGYESQFSTNHLGHFQLAARLWPALVKAEGARVVAVSSR
GHVFSGVDFDDPNFENREYAPYLAYGQSKTANALFAVSLDAVGAKYGIRAFSLHPGGIVTTNLVRHQSGEFLKASGYVDE
HGQPVIDPENNKKTVEQGASTTVWCAVSEKLDGLGGVYCENCNIATAVPGDSTEMLGVRPWATDPELAERLWQLSERLTG
FIAS
>Mature_323_residues
STPQAPIVSGFGAASTAAEVIAGHDLSGKVAIVTGGYSGLGFETARVLAEAGAKVIVPARNLGKAKAAVENIPGLALEML
DLMDPGSIDDFADRFLESGAPLHLLINNAAVMANPLTRDARGYESQFSTNHLGHFQLAARLWPALVKAEGARVVAVSSRG
HVFSGVDFDDPNFENREYAPYLAYGQSKTANALFAVSLDAVGAKYGIRAFSLHPGGIVTTNLVRHQSGEFLKASGYVDEH
GQPVIDPENNKKTVEQGASTTVWCAVSEKLDGLGGVYCENCNIATAVPGDSTEMLGVRPWATDPELAERLWQLSERLTGF
IAS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706523, Length=329, Percent_Identity=35.5623100303951, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI186928839, Length=301, Percent_Identity=36.8770764119601, Blast_Score=156, Evalue=2e-38,
Organism=Homo sapiens, GI166795268, Length=327, Percent_Identity=33.6391437308869, Blast_Score=146, Evalue=3e-35,
Organism=Homo sapiens, GI225579078, Length=303, Percent_Identity=34.6534653465347, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI10190746, Length=321, Percent_Identity=31.7757009345794, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI193804850, Length=305, Percent_Identity=34.7540983606557, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI146231950, Length=307, Percent_Identity=31.2703583061889, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI19923931, Length=267, Percent_Identity=33.7078651685393, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI13375997, Length=150, Percent_Identity=32, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193207620, Length=323, Percent_Identity=32.1981424148607, Blast_Score=137, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI71992402, Length=337, Percent_Identity=32.3442136498516, Blast_Score=130, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17532805, Length=323, Percent_Identity=31.2693498452012, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17532791, Length=325, Percent_Identity=30.1538461538462, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17535059, Length=330, Percent_Identity=30.6060606060606, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17558006, Length=314, Percent_Identity=30.5732484076433, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17505416, Length=316, Percent_Identity=28.1645569620253, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI32565532, Length=232, Percent_Identity=33.6206896551724, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI72001364, Length=227, Percent_Identity=29.0748898678414, Blast_Score=68, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324820, Length=233, Percent_Identity=28.3261802575107, Blast_Score=86, Evalue=7e-18,
Organism=Drosophila melanogaster, GI20129347, Length=326, Percent_Identity=31.2883435582822, Blast_Score=155, Evalue=3e-38,
Organism=Drosophila melanogaster, GI22024069, Length=302, Percent_Identity=34.7682119205298, Blast_Score=138, Evalue=6e-33,
Organism=Drosophila melanogaster, GI45554248, Length=299, Percent_Identity=34.4481605351171, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24640117, Length=299, Percent_Identity=34.4481605351171, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24586328, Length=300, Percent_Identity=34.3333333333333, Blast_Score=134, Evalue=6e-32,
Organism=Drosophila melanogaster, GI28573296, Length=304, Percent_Identity=34.2105263157895, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI19921754, Length=301, Percent_Identity=34.21926910299, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI161076371, Length=300, Percent_Identity=34, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24656154, Length=315, Percent_Identity=30.1587301587302, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI19922628, Length=315, Percent_Identity=30.1587301587302, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24647946, Length=297, Percent_Identity=30.3030303030303, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI45553409, Length=287, Percent_Identity=30.6620209059233, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24647948, Length=287, Percent_Identity=30.6620209059233, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24647931, Length=304, Percent_Identity=28.2894736842105, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI23397609, Length=217, Percent_Identity=30.4147465437788, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 34214; Mature: 34083

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPQAPIVSGFGAASTAAEVIAGHDLSGKVAIVTGGYSGLGFETARVLAEAGAKVIVPA
CCCCCCCCEECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEC
RNLGKAKAAVENIPGLALEMLDLMDPGSIDDFADRFLESGAPLHLLINNAAVMANPLTRD
CCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCCCCC
ARGYESQFSTNHLGHFQLAARLWPALVKAEGARVVAVSSRGHVFSGVDFDDPNFENREYA
CCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCCCCCC
PYLAYGQSKTANALFAVSLDAVGAKYGIRAFSLHPGGIVTTNLVRHQSGEFLKASGYVDE
CEEEECCCCCCCEEEEEEEHHCCCCCCCEEEEECCCCEEEHHHHHCCCCCEEEECCCCCC
HGQPVIDPENNKKTVEQGASTTVWCAVSEKLDGLGGVYCENCNIATAVPGDSTEMLGVRP
CCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCEEECCCCEEEECCCCCCCEEEECC
WATDPELAERLWQLSERLTGFIAS
CCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STPQAPIVSGFGAASTAAEVIAGHDLSGKVAIVTGGYSGLGFETARVLAEAGAKVIVPA
CCCCCCCEECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEC
RNLGKAKAAVENIPGLALEMLDLMDPGSIDDFADRFLESGAPLHLLINNAAVMANPLTRD
CCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCCCCC
ARGYESQFSTNHLGHFQLAARLWPALVKAEGARVVAVSSRGHVFSGVDFDDPNFENREYA
CCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCCCCCC
PYLAYGQSKTANALFAVSLDAVGAKYGIRAFSLHPGGIVTTNLVRHQSGEFLKASGYVDE
CEEEECCCCCCCEEEEEEEHHCCCCCCCEEEEECCCCEEEHHHHHCCCCCEEEECCCCCC
HGQPVIDPENNKKTVEQGASTTVWCAVSEKLDGLGGVYCENCNIATAVPGDSTEMLGVRP
CCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCEEECCCCEEEECCCCCCCEEEECC
WATDPELAERLWQLSERLTGFIAS
CCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]