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The map label for this gene is ydiU [C]

Identifier: 209548460

GI number: 209548460

Start: 874771

End: 876273

Strand: Reverse

Name: ydiU [C]

Synonym: Rleg2_0857

Alternate gene names: 209548460

Gene position: 876273-874771 (Counterclockwise)

Preceding gene: 209548462

Following gene: 209548459

Centisome position: 19.31

GC content: 65.93

Gene sequence:

>1503_bases
ATGACCTCCACGCTGCAGAAAAACCGGGCCGGCGCGGCCTTTCCGTTCGACAACAGCTATGCCGGCTTGCCCGCACGCTT
CTTTGCGGCGCAGACGCCGACCGCGGTGGCGGAACCCTGGCTGATCAAGCTCAACGAGCCGCTGGCCGTCGAACTCGGGC
TCGACGTCGAGACACTGCGCCGCGATGGTGCGGCGATCTTTTCCGGCAACCTCGTTCCCGAAGGCGCCGAGCCGCTGGCG
ATGGCCTATGCCGGCCATCAGTTCGGCGGCTTCTCGCCGCAGCTCGGCGACGGGCGGGCGATCCTGCTCGGCGAGGTGGT
CGACCGCAGCGGCAGGCGCTACGATATCCAGCTGAAGGGTGCCGGGCCCACACCTTTTTCGCGCCGCGGCGACGGGCGGG
CGGCAATCGGGCCGGTGTTGCGGGAATATATCATCAGCGAAGCGATGTTTGCGCTCGGCATTCCGGCGACGCGGGCGCTG
GCGGCGGTGACGACGGGCGAGCCGGTCTATCGCGAAGAAGTGCTGCCGGGCGCCGTCTTCACCCGGGTGGCGGCCAGCCA
TATCAGGGTCGGCACCTTCCAGTTTTTCGCCGCCAGAGGCGATACCGACGGCGTGCGGGCGCTCGCCGATTATGTCATCG
ACCGGCACTATCCCGACCTGAAAGACGCTGACAATCCATACCTTTCACTGTATTCAGCCGTCTCCGAGCGCCAGGCGGCG
CTGATCGCCCGCTGGCTGCATGTCGGTTTCATCCATGGGGTGATGAACACCGACAATATGACCGTCTCCGGCGAGACGAT
CGACTTCGGCCCCTGCGCCTTCATGGACAACTACGACCCGGCGACCGTGTTCTCGTCGATCGACCAGCACGGCCGTTATG
CCTATGCCAACCAACCCGGCATCGGCCAATGGAACCTGGCACGGCTCGGCGAAACGCTGCTGCCGCTGATCGACGAAGAG
CCGGACGGCGCGGTCGACAAGGCGAATGCGGTGATCCGGGCCTATGGCGAACGCTTCCAGGCGCATTGGCTGGCCGGCAT
GCGGGGAAAAATCGGCCTTGCCGGCGAAGAGGACGGCGATCTCGAACTGGTGCAGGCGCTGCTGTCGCTGATGCAGGCGC
AGGGCGCCGATTTCACCCTGACCTTCCGGCGGCTGTCCGATCTTGCCGGCGATGCCGCCGCAGAGACTGCTTTTGCCGCA
AGTTTCCGGGAGCCGGAGGCCTGCGGGCCCTGGCTTGCGCAGTGGCGCGAGAGATTGTCGCGCGATCCGCAGACGGCGGC
TGAGCGCGCTACGGCCATGTGCCGCGTCAATCCGGCCTTTATCCCGCGCAATCATCGAGTTGAACAGGCGATCGAGGCGG
CGGTCGAGAACGGCGATTTCACGCTGTTCGAGGCGCTGCTGACAGTGCTGGCGAAACCCTATGAGGATCAGCCCGGCTTT
GCCGCTTATATGGAGCCGCCGAAGCCGAGCGAGCGGGTGCTTGCGACCTTCTGCGGGACGTGA

Upstream 100 bases:

>100_bases
AGATCACGATTCCTTGCATCGGCCTGTTCTTCGTGAAGCGTTTCTGGCTCTTCATCCGAACCGGCTTGCGCCGCAGCCAC
CCCGGCCCTACCTATGAAGC

Downstream 100 bases:

>100_bases
GCGGGTTTCCTACAACCGTACCGTGACGTCTGCCTGCGGCAAATGCGGCCGTTGAAAGGCATCTCCTTCGCGCTATCTGG
CTGATCGGCGGGGCTTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MTSTLQKNRAGAAFPFDNSYAGLPARFFAAQTPTAVAEPWLIKLNEPLAVELGLDVETLRRDGAAIFSGNLVPEGAEPLA
MAYAGHQFGGFSPQLGDGRAILLGEVVDRSGRRYDIQLKGAGPTPFSRRGDGRAAIGPVLREYIISEAMFALGIPATRAL
AAVTTGEPVYREEVLPGAVFTRVAASHIRVGTFQFFAARGDTDGVRALADYVIDRHYPDLKDADNPYLSLYSAVSERQAA
LIARWLHVGFIHGVMNTDNMTVSGETIDFGPCAFMDNYDPATVFSSIDQHGRYAYANQPGIGQWNLARLGETLLPLIDEE
PDGAVDKANAVIRAYGERFQAHWLAGMRGKIGLAGEEDGDLELVQALLSLMQAQGADFTLTFRRLSDLAGDAAAETAFAA
SFREPEACGPWLAQWRERLSRDPQTAAERATAMCRVNPAFIPRNHRVEQAIEAAVENGDFTLFEALLTVLAKPYEDQPGF
AAYMEPPKPSERVLATFCGT

Sequences:

>Translated_500_residues
MTSTLQKNRAGAAFPFDNSYAGLPARFFAAQTPTAVAEPWLIKLNEPLAVELGLDVETLRRDGAAIFSGNLVPEGAEPLA
MAYAGHQFGGFSPQLGDGRAILLGEVVDRSGRRYDIQLKGAGPTPFSRRGDGRAAIGPVLREYIISEAMFALGIPATRAL
AAVTTGEPVYREEVLPGAVFTRVAASHIRVGTFQFFAARGDTDGVRALADYVIDRHYPDLKDADNPYLSLYSAVSERQAA
LIARWLHVGFIHGVMNTDNMTVSGETIDFGPCAFMDNYDPATVFSSIDQHGRYAYANQPGIGQWNLARLGETLLPLIDEE
PDGAVDKANAVIRAYGERFQAHWLAGMRGKIGLAGEEDGDLELVQALLSLMQAQGADFTLTFRRLSDLAGDAAAETAFAA
SFREPEACGPWLAQWRERLSRDPQTAAERATAMCRVNPAFIPRNHRVEQAIEAAVENGDFTLFEALLTVLAKPYEDQPGF
AAYMEPPKPSERVLATFCGT
>Mature_499_residues
TSTLQKNRAGAAFPFDNSYAGLPARFFAAQTPTAVAEPWLIKLNEPLAVELGLDVETLRRDGAAIFSGNLVPEGAEPLAM
AYAGHQFGGFSPQLGDGRAILLGEVVDRSGRRYDIQLKGAGPTPFSRRGDGRAAIGPVLREYIISEAMFALGIPATRALA
AVTTGEPVYREEVLPGAVFTRVAASHIRVGTFQFFAARGDTDGVRALADYVIDRHYPDLKDADNPYLSLYSAVSERQAAL
IARWLHVGFIHGVMNTDNMTVSGETIDFGPCAFMDNYDPATVFSSIDQHGRYAYANQPGIGQWNLARLGETLLPLIDEEP
DGAVDKANAVIRAYGERFQAHWLAGMRGKIGLAGEEDGDLELVQALLSLMQAQGADFTLTFRRLSDLAGDAAAETAFAAS
FREPEACGPWLAQWRERLSRDPQTAAERATAMCRVNPAFIPRNHRVEQAIEAAVENGDFTLFEALLTVLAKPYEDQPGFA
AYMEPPKPSERVLATFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=395, Percent_Identity=42.2784810126582, Blast_Score=279, Evalue=3e-75,
Organism=Escherichia coli, GI1787999, Length=473, Percent_Identity=41.6490486257928, Blast_Score=350, Evalue=1e-97,
Organism=Saccharomyces cerevisiae, GI6325034, Length=530, Percent_Identity=28.8679245283019, Blast_Score=179, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54237; Mature: 54105

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTLQKNRAGAAFPFDNSYAGLPARFFAAQTPTAVAEPWLIKLNEPLAVELGLDVETLR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHCCCEEEEECCCEEEEECCCHHHHH
RDGAAIFSGNLVPEGAEPLAMAYAGHQFGGFSPQLGDGRAILLGEVVDRSGRRYDIQLKG
CCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEEC
AGPTPFSRRGDGRAAIGPVLREYIISEAMFALGIPATRALAAVTTGEPVYREEVLPGAVF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEECCCCHHHHHCCCHHHH
TRVAASHIRVGTFQFFAARGDTDGVRALADYVIDRHYPDLKDADNPYLSLYSAVSERQAA
HHHHHHHHEECEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LIARWLHVGFIHGVMNTDNMTVSGETIDFGPCAFMDNYDPATVFSSIDQHGRYAYANQPG
HHHHHHHHHHHHHHCCCCCEEECCCEECCCCEECCCCCCHHHHHHHHHHCCCEEECCCCC
IGQWNLARLGETLLPLIDEEPDGAVDKANAVIRAYGERFQAHWLAGMRGKIGLAGEEDGD
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC
LELVQALLSLMQAQGADFTLTFRRLSDLAGDAAAETAFAASFREPEACGPWLAQWRERLS
HHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
RDPQTAAERATAMCRVNPAFIPRNHRVEQAIEAAVENGDFTLFEALLTVLAKPYEDQPGF
CCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCE
AAYMEPPKPSERVLATFCGT
EEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TSTLQKNRAGAAFPFDNSYAGLPARFFAAQTPTAVAEPWLIKLNEPLAVELGLDVETLR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHCCCEEEEECCCEEEEECCCHHHHH
RDGAAIFSGNLVPEGAEPLAMAYAGHQFGGFSPQLGDGRAILLGEVVDRSGRRYDIQLKG
CCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEEC
AGPTPFSRRGDGRAAIGPVLREYIISEAMFALGIPATRALAAVTTGEPVYREEVLPGAVF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEECCCCHHHHHCCCHHHH
TRVAASHIRVGTFQFFAARGDTDGVRALADYVIDRHYPDLKDADNPYLSLYSAVSERQAA
HHHHHHHHEECEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LIARWLHVGFIHGVMNTDNMTVSGETIDFGPCAFMDNYDPATVFSSIDQHGRYAYANQPG
HHHHHHHHHHHHHHCCCCCEEECCCEECCCCEECCCCCCHHHHHHHHHHCCCEEECCCCC
IGQWNLARLGETLLPLIDEEPDGAVDKANAVIRAYGERFQAHWLAGMRGKIGLAGEEDGD
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC
LELVQALLSLMQAQGADFTLTFRRLSDLAGDAAAETAFAASFREPEACGPWLAQWRERLS
HHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
RDPQTAAERATAMCRVNPAFIPRNHRVEQAIEAAVENGDFTLFEALLTVLAKPYEDQPGF
CCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCE
AAYMEPPKPSERVLATFCGT
EEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA