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The map label for this gene is ycfQ [H]

Identifier: 209548442

GI number: 209548442

Start: 858848

End: 859459

Strand: Direct

Name: ycfQ [H]

Synonym: Rleg2_0839

Alternate gene names: 209548442

Gene position: 858848-859459 (Clockwise)

Preceding gene: 209548440

Following gene: 209548444

Centisome position: 18.93

GC content: 65.2

Gene sequence:

>612_bases
ATGAAGGACGAGAAGAAGCGCGGTCGCCCACGGGCTTTCGACGCCAAGGCGGCACTCGGCAAGGCGCGCGACGTTTTCTG
GGACAGGGGCTTTGCGGCTGCCTCGCTCGACAATCTGAGTGCTGCGACCAACCTCAACCGCCCCAGCCTTTACGGTGCCT
TCGGCGACAAGGAGGATCTCTATCTCGATACGCTGGAGGGCTATCGGCAGGACGGCATGGATGCCTTGGCCGAAGCGCTC
GATCCGTCACTCCAGCTGCGCGACAATCTCGCCCGCGTCTATGAGAGCGCGCTGTCGATCTATCTGCATGGTGAAACCGC
CGCCCGCGGCTGTTTCCTGATCGGCACGGCAACGGCCGAGGCGATCCAGCATGAGCGCGTCCGCGAGGTGCTCGGCCGCA
GCCTCAACGATTTCGACGGTGAGATCGAAAAGCGCATGCGCCTTGCCGTCGAAAGCGGCGAGCTTCCCGAGAGCGCCGAT
CCGCAGATGATGGCAAGGCTTGCCTCCGCCGTCATGCATTCGCTTGCCGTGCGCGCCCGCGCCGGCGACAGCCGCGAGAC
GCTGGAAGCGATCGCCCGCTCCGGCGTCGAACTGATCTGCGGACGGCGCTAA

Upstream 100 bases:

>100_bases
CTGATGAGGCGGGCGATGCCGCCGTTAATGGCGTTGAACATCTGTACTGTTTCGCATAAAATAACCCTCGTCAAGAATTT
AATGCGAAACGGTACAGAAT

Downstream 100 bases:

>100_bases
TCCAGGTGGGATGTCTGCTTATCTGTTGGCCTCACCAGCCAGGCATAGGCAGCACCGGCGACAAGCAGCACCGAGGTGCC
GAGGAAAACCGCCCGCATGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDLYLDTLEGYRQDGMDALAEAL
DPSLQLRDNLARVYESALSIYLHGETAARGCFLIGTATAEAIQHERVREVLGRSLNDFDGEIEKRMRLAVESGELPESAD
PQMMARLASAVMHSLAVRARAGDSRETLEAIARSGVELICGRR

Sequences:

>Translated_203_residues
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDLYLDTLEGYRQDGMDALAEAL
DPSLQLRDNLARVYESALSIYLHGETAARGCFLIGTATAEAIQHERVREVLGRSLNDFDGEIEKRMRLAVESGELPESAD
PQMMARLASAVMHSLAVRARAGDSRETLEAIARSGVELICGRR
>Mature_203_residues
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDLYLDTLEGYRQDGMDALAEAL
DPSLQLRDNLARVYESALSIYLHGETAARGCFLIGTATAEAIQHERVREVLGRSLNDFDGEIEKRMRLAVESGELPESAD
PQMMARLASAVMHSLAVRARAGDSRETLEAIARSGVELICGRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=207, Percent_Identity=29.4685990338164, Blast_Score=84, Evalue=9e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22289; Mature: 22289

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCH
YLDTLEGYRQDGMDALAEALDPSLQLRDNLARVYESALSIYLHGETAARGCFLIGTATAE
HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEHHHHH
AIQHERVREVLGRSLNDFDGEIEKRMRLAVESGELPESADPQMMARLASAVMHSLAVRAR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
AGDSRETLEAIARSGVELICGRR
CCCCHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCH
YLDTLEGYRQDGMDALAEALDPSLQLRDNLARVYESALSIYLHGETAARGCFLIGTATAE
HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEHHHHH
AIQHERVREVLGRSLNDFDGEIEKRMRLAVESGELPESADPQMMARLASAVMHSLAVRAR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
AGDSRETLEAIARSGVELICGRR
CCCCHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]