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The map label for this gene is yhgF [C]

Identifier: 209548145

GI number: 209548145

Start: 556695

End: 559004

Strand: Direct

Name: yhgF [C]

Synonym: Rleg2_0539

Alternate gene names: 209548145

Gene position: 556695-559004 (Clockwise)

Preceding gene: 209548143

Following gene: 209548146

Centisome position: 12.27

GC content: 66.62

Gene sequence:

>2310_bases
ATGGCCGCTGACCTCCGTTTTCTCGCAGCCCGCATCTCGGCCGAAATCAACGCCCGTCCGGAACAGGCCAAAGCCGCCAT
CGAGCTGCTCGACGAGGGCGCCACCGTGCCCTTCATTGCGCGCTACCGCAAGGAGGTGACGGGCGGGCTCGACGATACGC
AGCTGCGCAATCTCGCCGAGCGGCTGGTCTATCTGCGCGAACTCGAAGCCCGGCGCGCCGCGATCGTCGAATCGATCACC
GGCCAGGGCAAGATGACCGACGAGCTGATGGGGAAGGTGGCAGGCGCCGAAACCAAGGCCGAGCTCGAAGACCTCTACCT
GCCCTATAAGCCGAAGCGGCGCACCCGCGCGGAAATTGCCCGCGAACGCGGCCTCGGCCCGCTTGCCGAGACGATCCTTG
CCGACCGCGGCCGGGAACCAGCGGCGCTCGCCGAAGGCTTCGTCACCGCTGACGTGCCCGATGTGAAGACGGCGCTCGAA
GGCGCGCGCGACATCATCGCCGAAGGCATTGCCGAAAATGCCGATCTGCTCGGCCGATTGCGCGCCCATATGCGCCAGGC
GTCACTGCTGAAGGCCAAGGTCGTCGACGGCAAGCAGGCGACGGGCGAGAAGTTCTCCGATTATTTCGACCATTCCGAAC
GCTGGGCGACCGCCCCCGGCCACCGCGCGCTCGCCATGCTGCGCGGCTGGAACGAAGAGGTGCTGACGCTGACGATCGAA
GCCGACGCCGAGACCGCCTCGCCGAACAAGCCGGTCGAACGGATGATCGCTGTGGCCTATGAGATCGGCGCGAGCCGGCC
CGGCGACCGCTGGCTGATGGAGGTCGCCAGCTGGACCTGGCGCGTCAAGCTTTCCATGTCGCTGTCGCTCGACCTGATGC
GGGAGCTGCGCGAGAGGGCCGAAGAGGAGGCGATCCATGTCTTCGCCCGCAATCTCAAGGATCTGCTGCTGGCCGCCCCC
GCCGGCTCGCGCGCCACCATGGGCCTCGATCCCGGCATCCGCACCGGCGTCAAGGTCGCCGTCGTCGACGGCACCGGCAA
GGTCGTGGCCACCTCGACCGTCTATCCCTTCCAGCCGAGGAACGACGTGCGCGGCGCCCAGATCGAGCTCGCATCGCTGA
TCCGCAAGCACAATGTCGAGCTGATCTCGATCGGCAACGGCACCGGCAGCCGCGAAACCGAAAAGCTGGTGGCCGACATG
CTGGCCGAGTTGCCGGCGCCGAAGCCGACCAAGGTCATCGTCTCGGAAGCGGGCGCCTCGGTCTATTCCGCCTCGGCGAC
CGCAGCGGCTGAGTTTCCCGATCTCGACGTGTCGCTGCGTGGCGCCGTCTCCATTGCCCGCCGCCTGCAGGATCCGCTCG
CCGAACTCGTCAAGATCGAGCCGAAGTCGATCGGCGTCGGCCAGTATCAGCACGACGTCGACCAACAGAAGCTGTCGCGC
TCGCTCGATGCGGTGGTCGAAGACGCGGTCAATGCTGTCGGTGTCGATCTCAACACCGCCTCTGCGCCGCTGCTTTCCCG
CGTCTCCGGCCTTGGGCCCTCGATTGCCGATGCCATCGTCCGCCACCGCGACAGCGAGGGCCGTTTCGAGACGCGCCGCG
ATCTGTTGAAGGTTGCCCGCCTCGGCGGCCGCACCTTCGAGCAATGCGCCGGCTTCCTGCGCATCCCGAACGGCAAGGAG
CCGCTCGACGCCTCCTCCGTCCACCCGGAGGCCTATGGCGTCGCCAAGAAGATCGTCGCCGCCTGCGGCCGTGATCTGCG
CGCATTGATGGGCGACAGCGCCATGCTGAAATCGGTCGATCCGCGCCAGTTTATCGACGAGAAATTCGGTCTGCCGACCG
TCAGGGACATCATCTCGGAACTGGAAAAGCCCGGTCGCGACCCGCGCCCAAGCTTCAAGACCGCCGCCTTCGCCGAGGGC
GTCAACGAAATTTCCGACCTCAAGCCCGGCATGATGCTGGAGGGCACGGTGACCAACGTCGCCGCCTTCGGCGCCTTCGT
CGATATCGGCGTGCACCAGGATGGTCTGGTGCATGTCTCCCAGCTTGCCGACCGCTTCGTCAAGGATCCGCACGAGGTGG
TCAAGGCGGGCGATGTCGTCAAGGTGCGGGTGGTCGAGGTCGACGCCAAGCGCAAGCGCATCGCTCTTTCGATGAAGCGC
GACGACGGTTCTGCAGCGCCGCCGCCGCGTGGTGATTCTCGCGGAAACCAGGGCTCGCGACCGCAGAACGAGCGCCGGCC
TGCCGCTCCCAAGCCGGAGAGCCAGGGTGCTTTTGGCGCAGCGCTGGCTGAGGCGATGAAGCGAAAATAA

Upstream 100 bases:

>100_bases
CTACTTCCGTTGTGGAAACCACAGTCGGGCATTGCCTTGCCGCTTTTCGCCGCTATGGTCCCGCAACTTTCGTCGAAACA
GGAAATCCCCAGGAAACCCT

Downstream 100 bases:

>100_bases
GGGTTTAGCCGGTATTTCGGCAAAAATGCAACAGTTTGGCAACGTTCTGAACGGAGTGCTAAATCCGGCGCTTGTAAGGC
GAAGGAGAGTTATTAAGTTG

Product: RNA binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 769; Mature: 768

Protein sequence:

>769_residues
MAADLRFLAARISAEINARPEQAKAAIELLDEGATVPFIARYRKEVTGGLDDTQLRNLAERLVYLRELEARRAAIVESIT
GQGKMTDELMGKVAGAETKAELEDLYLPYKPKRRTRAEIARERGLGPLAETILADRGREPAALAEGFVTADVPDVKTALE
GARDIIAEGIAENADLLGRLRAHMRQASLLKAKVVDGKQATGEKFSDYFDHSERWATAPGHRALAMLRGWNEEVLTLTIE
ADAETASPNKPVERMIAVAYEIGASRPGDRWLMEVASWTWRVKLSMSLSLDLMRELRERAEEEAIHVFARNLKDLLLAAP
AGSRATMGLDPGIRTGVKVAVVDGTGKVVATSTVYPFQPRNDVRGAQIELASLIRKHNVELISIGNGTGSRETEKLVADM
LAELPAPKPTKVIVSEAGASVYSASATAAAEFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQQKLSR
SLDAVVEDAVNAVGVDLNTASAPLLSRVSGLGPSIADAIVRHRDSEGRFETRRDLLKVARLGGRTFEQCAGFLRIPNGKE
PLDASSVHPEAYGVAKKIVAACGRDLRALMGDSAMLKSVDPRQFIDEKFGLPTVRDIISELEKPGRDPRPSFKTAAFAEG
VNEISDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKR
DDGSAAPPPRGDSRGNQGSRPQNERRPAAPKPESQGAFGAALAEAMKRK

Sequences:

>Translated_769_residues
MAADLRFLAARISAEINARPEQAKAAIELLDEGATVPFIARYRKEVTGGLDDTQLRNLAERLVYLRELEARRAAIVESIT
GQGKMTDELMGKVAGAETKAELEDLYLPYKPKRRTRAEIARERGLGPLAETILADRGREPAALAEGFVTADVPDVKTALE
GARDIIAEGIAENADLLGRLRAHMRQASLLKAKVVDGKQATGEKFSDYFDHSERWATAPGHRALAMLRGWNEEVLTLTIE
ADAETASPNKPVERMIAVAYEIGASRPGDRWLMEVASWTWRVKLSMSLSLDLMRELRERAEEEAIHVFARNLKDLLLAAP
AGSRATMGLDPGIRTGVKVAVVDGTGKVVATSTVYPFQPRNDVRGAQIELASLIRKHNVELISIGNGTGSRETEKLVADM
LAELPAPKPTKVIVSEAGASVYSASATAAAEFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQQKLSR
SLDAVVEDAVNAVGVDLNTASAPLLSRVSGLGPSIADAIVRHRDSEGRFETRRDLLKVARLGGRTFEQCAGFLRIPNGKE
PLDASSVHPEAYGVAKKIVAACGRDLRALMGDSAMLKSVDPRQFIDEKFGLPTVRDIISELEKPGRDPRPSFKTAAFAEG
VNEISDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKR
DDGSAAPPPRGDSRGNQGSRPQNERRPAAPKPESQGAFGAALAEAMKRK
>Mature_768_residues
AADLRFLAARISAEINARPEQAKAAIELLDEGATVPFIARYRKEVTGGLDDTQLRNLAERLVYLRELEARRAAIVESITG
QGKMTDELMGKVAGAETKAELEDLYLPYKPKRRTRAEIARERGLGPLAETILADRGREPAALAEGFVTADVPDVKTALEG
ARDIIAEGIAENADLLGRLRAHMRQASLLKAKVVDGKQATGEKFSDYFDHSERWATAPGHRALAMLRGWNEEVLTLTIEA
DAETASPNKPVERMIAVAYEIGASRPGDRWLMEVASWTWRVKLSMSLSLDLMRELRERAEEEAIHVFARNLKDLLLAAPA
GSRATMGLDPGIRTGVKVAVVDGTGKVVATSTVYPFQPRNDVRGAQIELASLIRKHNVELISIGNGTGSRETEKLVADML
AELPAPKPTKVIVSEAGASVYSASATAAAEFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQQKLSRS
LDAVVEDAVNAVGVDLNTASAPLLSRVSGLGPSIADAIVRHRDSEGRFETRRDLLKVARLGGRTFEQCAGFLRIPNGKEP
LDASSVHPEAYGVAKKIVAACGRDLRALMGDSAMLKSVDPRQFIDEKFGLPTVRDIISELEKPGRDPRPSFKTAAFAEGV
NEISDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKRD
DGSAAPPPRGDSRGNQGSRPQNERRPAAPKPESQGAFGAALAEAMKRK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=798, Percent_Identity=32.7067669172932, Blast_Score=350, Evalue=4e-96,
Organism=Homo sapiens, GI27597090, Length=732, Percent_Identity=23.224043715847, Blast_Score=112, Evalue=2e-24,
Organism=Escherichia coli, GI87082262, Length=745, Percent_Identity=61.2080536912752, Blast_Score=881, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=40.2597402597403, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=733, Percent_Identity=30.0136425648022, Blast_Score=267, Evalue=2e-71,
Organism=Caenorhabditis elegans, GI17552892, Length=279, Percent_Identity=31.5412186379928, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI62484314, Length=757, Percent_Identity=33.553500660502, Blast_Score=372, Evalue=1e-103,
Organism=Drosophila melanogaster, GI24640080, Length=813, Percent_Identity=21.6482164821648, Blast_Score=92, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83209; Mature: 83078

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADLRFLAARISAEINARPEQAKAAIELLDEGATVPFIARYRKEVTGGLDDTQLRNLAE
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RLVYLRELEARRAAIVESITGQGKMTDELMGKVAGAETKAELEDLYLPYKPKRRTRAEIA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHH
RERGLGPLAETILADRGREPAALAEGFVTADVPDVKTALEGARDIIAEGIAENADLLGRL
HHHCCCHHHHHHHHHCCCCCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
RAHMRQASLLKAKVVDGKQATGEKFSDYFDHSERWATAPGHRALAMLRGWNEEVLTLTIE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHCCCCCCHHHHHHHHCCCCEEEEEEEE
ADAETASPNKPVERMIAVAYEIGASRPGDRWLMEVASWTWRVKLSMSLSLDLMRELRERA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHHH
EEEAIHVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKVVATSTVYPFQPR
HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECEECCCCCC
NDVRGAQIELASLIRKHNVELISIGNGTGSRETEKLVADMLAELPAPKPTKVIVSEAGAS
CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
VYSASATAAAEFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQQKLSR
HHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
SLDAVVEDAVNAVGVDLNTASAPLLSRVSGLGPSIADAIVRHRDSEGRFETRRDLLKVAR
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LGGRTFEQCAGFLRIPNGKEPLDASSVHPEAYGVAKKIVAACGRDLRALMGDSAMLKSVD
HCCCCHHHHCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCHHHHHCCC
PRQFIDEKFGLPTVRDIISELEKPGRDPRPSFKTAAFAEGVNEISDLKPGMMLEGTVTNV
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHH
AAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKR
HHHHHHHEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEEEEEEEC
DDGSAAPPPRGDSRGNQGSRPQNERRPAAPKPESQGAFGAALAEAMKRK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AADLRFLAARISAEINARPEQAKAAIELLDEGATVPFIARYRKEVTGGLDDTQLRNLAE
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RLVYLRELEARRAAIVESITGQGKMTDELMGKVAGAETKAELEDLYLPYKPKRRTRAEIA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHH
RERGLGPLAETILADRGREPAALAEGFVTADVPDVKTALEGARDIIAEGIAENADLLGRL
HHHCCCHHHHHHHHHCCCCCHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
RAHMRQASLLKAKVVDGKQATGEKFSDYFDHSERWATAPGHRALAMLRGWNEEVLTLTIE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHCCCCCCHHHHHHHHCCCCEEEEEEEE
ADAETASPNKPVERMIAVAYEIGASRPGDRWLMEVASWTWRVKLSMSLSLDLMRELRERA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHHH
EEEAIHVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKVVATSTVYPFQPR
HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECEECCCCCC
NDVRGAQIELASLIRKHNVELISIGNGTGSRETEKLVADMLAELPAPKPTKVIVSEAGAS
CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
VYSASATAAAEFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQQKLSR
HHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
SLDAVVEDAVNAVGVDLNTASAPLLSRVSGLGPSIADAIVRHRDSEGRFETRRDLLKVAR
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LGGRTFEQCAGFLRIPNGKEPLDASSVHPEAYGVAKKIVAACGRDLRALMGDSAMLKSVD
HCCCCHHHHCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCHHHHHCCC
PRQFIDEKFGLPTVRDIISELEKPGRDPRPSFKTAAFAEGVNEISDLKPGMMLEGTVTNV
HHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHH
AAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIALSMKR
HHHHHHHEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEEEEEEEC
DDGSAAPPPRGDSRGNQGSRPQNERRPAAPKPESQGAFGAALAEAMKRK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]