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The map label for this gene is yciR [C]

Identifier: 209548104

GI number: 209548104

Start: 512411

End: 513775

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_0498

Alternate gene names: 209548104

Gene position: 512411-513775 (Clockwise)

Preceding gene: 209548103

Following gene: 209548110

Centisome position: 11.29

GC content: 62.93

Gene sequence:

>1365_bases
ATGATGAAATCGGCGGACACAGCTTTCTTGACCGTCGGTCAGAATGAGCTTCAGGCGATGGCCTATACCGATCCGCTCAC
CGGATTGGGAAACCGCAATCGCATGCGGGACAAGGTCCTGCAGATCTCTTCCGAGCGCGCCAGCGACCCGGCTCCCTTCA
CCATCGGCATCGCCAATCTCGACAGTTTCAAACCGATCAACGATCTCTTCGGCTCGGCCGCCGGCGATGAAATCCTTTGC
CAGGTCGCCCATCGCCTGAGGGCCTGCATTCCGGATGGCGCATTGGTCACCCGCCATGACGGAGATGAATTCGCCTTCGT
GCTGCCGCTGATCTTCGAGCGGGCGAGTGCCGAAAAATTCGGGCAGATGATCCGCGAAGTATTGTCGGCCCCCTATGATC
TCGGCGACCGCAACGTCCGTCTCTCCGCCTCCCTCGGCTTTGCCATCTACCCGTTCGCCGGAGAAGATTGCGAGGAGCTG
CTGAAGAGCGCCGAAACCGCCCTTTACCGTTCCAAGCGCCGCGGCCGCGGCCAGATCACCGTCTATTCGCGCGAGATCGC
CCAGGAAATGAAGCGCGCGACGCAGCTGGAGCAGGCGCTCAGAAACGCCATCATCTCCGATGCGATCGACGTGCATTTCC
AGCCGATCGTCTCGCTCTCCAACAATCAGGTGGTCGGCTTCGAGGCGCTCGCCCGCTGGAACGATCCCGATCTCGGCTTC
GTCTCGCCCGGCGTCTTCGTGCCGCTCGCCGAAGAACGCGGCTTCATCGATGCGCTGTCGGAGGCGCTGCTGCGCAAAGC
CGCCGAGGCCGCCCTTTCCTGGCCGCGCGAACTCTTCCTGTCGTTCAATCTCTCCTCGGCGCAGCTGATGGATCCGGGCA
CCAGCAGCAGCGTCCTGTCGATCCTCGGCCGCGTCGGCTTCGATCCGCATCGCCTGGAGCTGGAGATCACCGAGACCGCG
GTGATGAGCTCGGCCGATACCGCCCACCGCATCATCGCCGATCTGCGCGCCGCCGGCGTGCGTATTTCGCTCGATGATTT
CGGCACCGGCCAGTCAAGCCTCGGGCGGCTTCGCGACTTCATCTTCGACAAGATCAAGATCGACCGCGCCTTCGTCTCGC
GCATCAATTCCGACCGCGCCTCCGAACACATCATCAAGGCGATTCTGACCATGTGCGACGGCCTGGAGCTGGAAGTCGTG
GCTGAGGGCATCGAGGATTATGCCGAGGCGGTGAAGCTGCGCATGCTCGGCTGCGGCATGGGCCAGGGCTATCACTTCGG
CCGCCCGGCCGATGGGATCGCCACGCTGCGCTTCCTGCACGAGAACTACTACGATCCGACCATGGCGGAGCGTGTCAGCG
CATAA

Upstream 100 bases:

>100_bases
CGGATTCTGGGGTGGTTTTAACGGCAATGCCTGCTGATTTACTATCAAATTGTTAAGACATGCCGGTCATTCTTTGCATA
GCGCGGGAAAGCTCGGGTGA

Downstream 100 bases:

>100_bases
AGCATGATGCCGAAAACCGTGAGCGGTTTTCTCAACGACCGACATAGCAAAAAGCGATGGCGCCCCTAGGAGCGCCATCG
CCTACGCTATACTACTGCGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MMKSADTAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQISSERASDPAPFTIGIANLDSFKPINDLFGSAAGDEILC
QVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPYDLGDRNVRLSASLGFAIYPFAGEDCEEL
LKSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGF
VSPGVFVPLAEERGFIDALSEALLRKAAEAALSWPRELFLSFNLSSAQLMDPGTSSSVLSILGRVGFDPHRLELEITETA
VMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKIDRAFVSRINSDRASEHIIKAILTMCDGLELEVV
AEGIEDYAEAVKLRMLGCGMGQGYHFGRPADGIATLRFLHENYYDPTMAERVSA

Sequences:

>Translated_454_residues
MMKSADTAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQISSERASDPAPFTIGIANLDSFKPINDLFGSAAGDEILC
QVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPYDLGDRNVRLSASLGFAIYPFAGEDCEEL
LKSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGF
VSPGVFVPLAEERGFIDALSEALLRKAAEAALSWPRELFLSFNLSSAQLMDPGTSSSVLSILGRVGFDPHRLELEITETA
VMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKIDRAFVSRINSDRASEHIIKAILTMCDGLELEVV
AEGIEDYAEAVKLRMLGCGMGQGYHFGRPADGIATLRFLHENYYDPTMAERVSA
>Mature_454_residues
MMKSADTAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQISSERASDPAPFTIGIANLDSFKPINDLFGSAAGDEILC
QVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPYDLGDRNVRLSASLGFAIYPFAGEDCEEL
LKSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGF
VSPGVFVPLAEERGFIDALSEALLRKAAEAALSWPRELFLSFNLSSAQLMDPGTSSSVLSILGRVGFDPHRLELEITETA
VMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKIDRAFVSRINSDRASEHIIKAILTMCDGLELEVV
AEGIEDYAEAVKLRMLGCGMGQGYHFGRPADGIATLRFLHENYYDPTMAERVSA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=31.4685314685315, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=30.952380952381, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=26.4775413711584, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=36.3636363636364, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=32.8063241106719, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787055, Length=381, Percent_Identity=26.509186351706, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=31.0483870967742, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=30.379746835443, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081980, Length=221, Percent_Identity=31.6742081447964, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=27.2340425531915, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=260, Percent_Identity=30.3846153846154, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788849, Length=273, Percent_Identity=28.2051282051282, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787410, Length=249, Percent_Identity=27.3092369477912, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=31.3253012048193, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=33.5403726708075, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788381, Length=410, Percent_Identity=24.8780487804878, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=32.3699421965318, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789650, Length=421, Percent_Identity=19.7149643705463, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=29.4478527607362, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=30.8641975308642, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=126, Percent_Identity=36.5079365079365, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=142, Percent_Identity=30.2816901408451, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=28.6549707602339, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 49904; Mature: 49904

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKSADTAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQISSERASDPAPFTIGIANL
CCCCCCCEEEEECHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
DSFKPINDLFGSAAGDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKF
CCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEHHHHHHHHCCHHHH
GQMIREVLSAPYDLGDRNVRLSASLGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQIT
HHHHHHHHHCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
VYSREIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGF
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHCCCCCCCCE
VSPGVFVPLAEERGFIDALSEALLRKAAEAALSWPRELFLSFNLSSAQLMDPGTSSSVLS
ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCEECCCCCCHHHHH
ILGRVGFDPHRLELEITETAVMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDF
HHHHCCCCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHH
IFDKIKIDRAFVSRINSDRASEHIIKAILTMCDGLELEVVAEGIEDYAEAVKLRMLGCGM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GQGYHFGRPADGIATLRFLHENYYDPTMAERVSA
CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCC
>Mature Secondary Structure
MMKSADTAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQISSERASDPAPFTIGIANL
CCCCCCCEEEEECHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
DSFKPINDLFGSAAGDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKF
CCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEHHHHHHHHCCHHHH
GQMIREVLSAPYDLGDRNVRLSASLGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQIT
HHHHHHHHHCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
VYSREIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGF
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHCCCCCCCCE
VSPGVFVPLAEERGFIDALSEALLRKAAEAALSWPRELFLSFNLSSAQLMDPGTSSSVLS
ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCEECCCCCCHHHHH
ILGRVGFDPHRLELEITETAVMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDF
HHHHCCCCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHH
IFDKIKIDRAFVSRINSDRASEHIIKAILTMCDGLELEVVAEGIEDYAEAVKLRMLGCGM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GQGYHFGRPADGIATLRFLHENYYDPTMAERVSA
CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]