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The map label for this gene is erfK [H]

Identifier: 209548062

GI number: 209548062

Start: 466857

End: 467543

Strand: Reverse

Name: erfK [H]

Synonym: Rleg2_0455

Alternate gene names: 209548062

Gene position: 467543-466857 (Counterclockwise)

Preceding gene: 209548063

Following gene: 209548061

Centisome position: 10.3

GC content: 63.46

Gene sequence:

>687_bases
ATGATCAAATTGATGCCAGGTCTGGCCGCGGCCGGACTTGTCCTGTCCTTGATGTCTGCATCCGCCTTTGCCGCGCCTGC
CGGCTCCGACAACACACAGCGTCCGGCGCAAGTCGTGCGTGTGGCGCAGATGCCAAAATATGTGAAGCCGGAATTCAAGC
GCAAGAAAGTGCGGCTGGTGACGACGGAAGCAGCCGGCACCGTGATTATCGATACCAACAACAAGTATCTCTACCTCATC
GAGGGCAACAACCGCGCCACCCGCTACGGCATCGGCGTCGGCCGCGACGGCTTCGGCTGGTCGGGCGTCGTCAAGATCGG
CCGCAAGGCGGAATGGCCGGCATGGACGCCGCCGGCCGAGATGCGCCGCCGCGAAGCCGCCAAGGGACACATCATTCCCG
CTTTCCAGGAAGGCGGCGAGGACAATCCGCTCGGTGCGCGCGCCATGTATCTCTACCAGGGCGGCCGCGACACCATCTTC
CGCATCCACGGCACCAACCAGCCCTGGACGATCGGCCTCAACATGTCCTCCGGCTGCATCCGGATGATGAACGAAGACGT
GACGCATCTTTACGATCGCGCGCCTGTCGGCACCAAGGTGATCGTTATCGGCCCCGGCAACAAGCAGGGCAAGGTCGCGT
TCGAGGACCGCGGCATCGACGTGCTGCGCACGCTTTTCGGCGGCTGA

Upstream 100 bases:

>100_bases
GCGGCTTCCCTCCCCGAAATTGCTTTATCCGGCCGGGCCGATCTTGAATCGGGCAGAAGTTCATGTAGCTTCAGGCAGAT
TTGCTTGAGGGGAATCGATC

Downstream 100 bases:

>100_bases
GCAACACTTTAGAAAAAAATGAAAGGCGCTTTTCGTGGCCCCTTTCATTTCTCTTAGACATTGCGGCGGAAAGCTGGCAC
AGCTGCCGCAAGGTCGACTC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MIKLMPGLAAAGLVLSLMSASAFAAPAGSDNTQRPAQVVRVAQMPKYVKPEFKRKKVRLVTTEAAGTVIIDTNNKYLYLI
EGNNRATRYGIGVGRDGFGWSGVVKIGRKAEWPAWTPPAEMRRREAAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIF
RIHGTNQPWTIGLNMSSGCIRMMNEDVTHLYDRAPVGTKVIVIGPGNKQGKVAFEDRGIDVLRTLFGG

Sequences:

>Translated_228_residues
MIKLMPGLAAAGLVLSLMSASAFAAPAGSDNTQRPAQVVRVAQMPKYVKPEFKRKKVRLVTTEAAGTVIIDTNNKYLYLI
EGNNRATRYGIGVGRDGFGWSGVVKIGRKAEWPAWTPPAEMRRREAAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIF
RIHGTNQPWTIGLNMSSGCIRMMNEDVTHLYDRAPVGTKVIVIGPGNKQGKVAFEDRGIDVLRTLFGG
>Mature_228_residues
MIKLMPGLAAAGLVLSLMSASAFAAPAGSDNTQRPAQVVRVAQMPKYVKPEFKRKKVRLVTTEAAGTVIIDTNNKYLYLI
EGNNRATRYGIGVGRDGFGWSGVVKIGRKAEWPAWTPPAEMRRREAAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIF
RIHGTNQPWTIGLNMSSGCIRMMNEDVTHLYDRAPVGTKVIVIGPGNKQGKVAFEDRGIDVLRTLFGG

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=153, Percent_Identity=37.9084967320261, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787040, Length=153, Percent_Identity=37.2549019607843, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1787356, Length=156, Percent_Identity=36.5384615384615, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787968, Length=155, Percent_Identity=35.4838709677419, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24859; Mature: 24859

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLMPGLAAAGLVLSLMSASAFAAPAGSDNTQRPAQVVRVAQMPKYVKPEFKRKKVRLV
CEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCEEEEE
TTEAAGTVIIDTNNKYLYLIEGNNRATRYGIGVGRDGFGWSGVVKIGRKAEWPAWTPPAE
EECCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCHHHEEECCCCCCCCCCCHHH
MRRREAAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNMSSGCI
HHHHHHHCCCEEEHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCHH
RMMNEDVTHLYDRAPVGTKVIVIGPGNKQGKVAFEDRGIDVLRTLFGG
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHCC
>Mature Secondary Structure
MIKLMPGLAAAGLVLSLMSASAFAAPAGSDNTQRPAQVVRVAQMPKYVKPEFKRKKVRLV
CEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCEEEEE
TTEAAGTVIIDTNNKYLYLIEGNNRATRYGIGVGRDGFGWSGVVKIGRKAEWPAWTPPAE
EECCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCHHHEEECCCCCCCCCCCHHH
MRRREAAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNMSSGCI
HHHHHHHCCCEEEHHHCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCHH
RMMNEDVTHLYDRAPVGTKVIVIGPGNKQGKVAFEDRGIDVLRTLFGG
HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]