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The map label for this gene is secD [H]

Identifier: 209547898

GI number: 209547898

Start: 294745

End: 297294

Strand: Reverse

Name: secD [H]

Synonym: Rleg2_0290

Alternate gene names: 209547898

Gene position: 297294-294745 (Counterclockwise)

Preceding gene: 209547899

Following gene: 209547897

Centisome position: 6.55

GC content: 63.25

Gene sequence:

>2550_bases
ATGCGTACTTCACCATGGCTGGTGTTCACCTATACGGTGATCATCCTTCTCGGCCTATTGATCGCTTTACCGAACGTCCT
GCCGCAATCCGTCCTTCAGCGCGTACCGGCATGGCTGCCGCATGAACAGGTGTCGCTCGGCCTCGACCTTCGCGGCGGCT
CGCATCTCGTTCTGGAAGTCGACGAGGCGGATCTGACCAAGGAGCGGCTGCAATCACTGCTTCAGGACGCGCGCCGCGTG
CTGCGCGAAAAGGGCATCCAGCCGAAGGCCGTCGTGCGCAGCCAGAACCAGATCGTCGTGACGCTCGCCGATGCCACGCA
GAGCGATGCTGCCGTCACCGACCTCAAGACGCTCGCCAACCCGATCAGCACAGGCCTCAGCGCCGGCCAGTCGGATCTTG
ATGTCCTGGCGAACGGAGCGACCATCACCATCGGCTTCTCCAAGGCTGGCATCTCCGCCAATGTCGACAACGCCGTCCAG
CAGAGCCTTGAAGTCATCCGCCAGCGCGTCGACCAGGTCGGCGTTTCCGAGCCGACCATTCAGCGCATCGGCGCCAATCG
CGTGCTCGTGCAGCTGCCCGGCGCCCAGGATCCGACGCGGCTGCGCCAGCTTCTCGGCTCCACGGCGAAGATGTCGTTCC
ATATGCTGTCGCCGAACAACCAGCCCGGCCCCGGCGTGACCATGCTGAAGGACGATGAAGGCCGGACCTACCCGGTGCTT
GATCGCGTCGAACTCTCCGGCGACCGGCTTTCCGACGCCCGCGTCAGCTTCGACCCGAACACGCATGAGCCGATCGTCAG
CTTCCGCTTCGACAGCGCCGGCGCCAGCCGCTTTGCCGATATCACCCGTCAGAATGTCGGCAATCCCTTCGCCATCGTCC
TCGACGACAAGGTGCTGAGCGCACCTGTCATCCGCGAGCCGATCACCGGCGGTTCCGGCCAGATCTCCGGCAACTTCTCT
GCCGACAGCGCCACGACGCTTGCCGCCATGCTGCGTGCCGGCGCCCTGCCCGCCAAGCTGACGGTCATCGAGGAGCGCAC
CGTCGGCGCCGACCTCGGTGCCGATGCCATCAAGATGGGCATCTATTCCGGCATTGTCGGCTTTATCCTCGTCGCAGTCT
TCATTTTCGTACTCTATGGCACCTGGGGCGTGCTGGCGAATATCGCGCTCTTGATCCACACGATCCTGACCTTCTCGGCC
CTGACGCTGGTCGGTGCGACGCTGACGCTGCCGGGCATTGCCGGTGTCGTTCTCGGCATCGGCCTTGCGGTCGATGCGAA
CGTCCTCATCAACGAGCGTATTCGTGAAGAGACCCGCAAGGGCAAGGGCGCCTTTGCCGCCATCGATACCGGCTTCAATC
GCGCCTATTCGACCATCATCGACGGCAATATGACCGCCCTGATCGCTGCGGCCATCCTGTTCTTTTTCGGTTCCGGCCCG
GTTCGCGGCTTTGCCGTGACCATGGCGCTCGGCCTGATCATTTCGATGTTCACCTCGGTCGCCTTCGTTCGCGTTGCGAT
GATCGAGATCACCCGCCGCCGCAAGTTCAAGGTGCTGAACATCCGGCCGCTGATCCCGTTCAGCCCCTATGACAAGCACA
TCGAGTTCATGAAGGCGCGCTTCTTCGGCGTCACCGTTTCGGCGCTGCTTTCGATCGCCTCCGTCGTGCTCTTCATTCAC
CCCGGTCTCAACTACGGCGTCGATTTCCGCGGCGGCATCCAGATGTCCGTCAAGACCCAAGGGGTGGCCGATCTGGCGAA
GTTCCGCGAAGGTCTTGATAGTCTCGGCCTCGGCGAAATCACGCTGCAGTCCTTCGGCGACAAAAGCAGCATTCTCGTTC
GCGCCCAGCGACAGGAGGGCGGCGAAGAGGCGCAGACGGCAGCGGTGACCAAGCTGAAGGCCGAAGTCGCCAAGATCGAT
CCGACCGCCACCGTCGAAGGCACGGATGTCATCGGCCCGAAGGTCAGCGGCGAGCTTGCCTGGGCCGGCATCCTGTCGGT
GGTGATCGCCAGCCTGGCGATGCTCATCTATATCTGGGTGCGGTTCGAATGGCCGTTTGCCGTCGGCGCTATCGTCACGC
TGGTCCTCGACGTCACCAAGGCGATCGGCTTCTTTGCGATCACCGGCCTCGACTTCAACCTGACGGCCATCGCCGCCATC
CTGACGCTCGTCGGTTACTCGGTCAACGACAAGGTCGTCGTCTATGACCGCATGCGCGAAAACATGCGGCTCTACAAGTC
GATGCCGCTGCGCGAGATCATCGACAAGTCAATCAACGAGACCCTGGCACGAAGCCTCTACACCAATGCGACGGCCTTCC
TCGCCCTGGTGCCGATGGCAATCTGGGGCGGCAGCGCCGTCTCGAGCTTTGCGATCCCGATGGTCTTCGGCATTCTCGTG
GCCGGCGCCTCGTCGATCTTCATCGCGGCACCGATCCTGCTCTTCCTCGGCGACTGGCGCCGCCGCCATGCCAAGGTGGC
AGCGGCAACCGATGGCGCCGTCGAAATCATCCCGCCGGAACAGGGTCGCCCGCGCAAGTCGGCGAGCTAA

Upstream 100 bases:

>100_bases
CGCCGGCTGCAGCCTGACGTTTGCGCCGAGGCGCTTCCGACATCTGACGACATGCCGCCAGCGCCCGAGCGCCGGCCCTC
GATTATCTAAGGAATACAAC

Downstream 100 bases:

>100_bases
AATCCGCCTGATGACGCATCCTTGAAGAGGGCGCCGGTTGCAGAGCCGGCGCCCTCTTTCTATTGTCGATGACTGCAAGG
ATAAAATCCTGCAGCGATTC

Product: bifunctional preprotein translocase subunit SecD/SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 849; Mature: 849

Protein sequence:

>849_residues
MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEVDEADLTKERLQSLLQDARRV
LREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLANPISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQ
QSLEVIRQRVDQVGVSEPTIQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL
DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFS
ADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSA
LTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP
VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKARFFGVTVSALLSIASVVLFIH
PGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKID
PTATVEGTDVIGPKVSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI
LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILV
AGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPEQGRPRKSAS

Sequences:

>Translated_849_residues
MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEVDEADLTKERLQSLLQDARRV
LREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLANPISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQ
QSLEVIRQRVDQVGVSEPTIQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL
DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFS
ADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSA
LTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP
VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKARFFGVTVSALLSIASVVLFIH
PGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKID
PTATVEGTDVIGPKVSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI
LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILV
AGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPEQGRPRKSAS
>Mature_849_residues
MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEVDEADLTKERLQSLLQDARRV
LREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLANPISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQ
QSLEVIRQRVDQVGVSEPTIQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL
DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFS
ADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSA
LTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP
VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKARFFGVTVSALLSIASVVLFIH
PGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKID
PTATVEGTDVIGPKVSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI
LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILV
AGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPEQGRPRKSAS

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=524, Percent_Identity=36.0687022900763, Blast_Score=292, Evalue=6e-80,
Organism=Escherichia coli, GI1786610, Length=302, Percent_Identity=31.7880794701987, Blast_Score=178, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 90898; Mature: 90898

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCEEEEEE
DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLAN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
PISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQQSLEVIRQRVDQVGVSEPTI
HHHHHHCCCCCCHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
QRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL
HHCCCCEEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCCCCCEEEEECCCCCCCCCE
DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLS
EEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHC
APVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMG
CCHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
IYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSALTLVGATLTLPGIAGVVLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP
HHHCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHH
FFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEI
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHCHHHCCCCHH
TLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPKVSGELA
HHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHH
WAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI
HHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMA
HHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPE
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCC
QGRPRKSAS
CCCCCCCCC
>Mature Secondary Structure
MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCEEEEEE
DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLAN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
PISTGLSAGQSDLDVLANGATITIGFSKAGISANVDNAVQQSLEVIRQRVDQVGVSEPTI
HHHHHHCCCCCCHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
QRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGPGVTMLKDDEGRTYPVL
HHCCCCEEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCCCCCEEEEECCCCCCCCCE
DRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDDKVLS
EEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHC
APVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADAIKMG
CCHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHH
IYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSALTLVGATLTLPGIAGVVLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFFGSGP
HHHCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
VRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFSPYDKHIEFMKAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHH
FFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDSLGLGEI
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHCHHHCCCCHH
TLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPKVSGELA
HHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHH
WAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAI
HHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
LTLVGYSVNDKVVVYDRMRENMRLYKSMPLREIIDKSINETLARSLYTNATAFLALVPMA
HHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAKVAAATDGAVEIIPPE
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCC
QGRPRKSAS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]