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The map label for this gene is xylR [H]

Identifier: 209547869

GI number: 209547869

Start: 265112

End: 266326

Strand: Direct

Name: xylR [H]

Synonym: Rleg2_0260

Alternate gene names: 209547869

Gene position: 265112-266326 (Clockwise)

Preceding gene: 209547868

Following gene: 209547870

Centisome position: 5.84

GC content: 63.54

Gene sequence:

>1215_bases
ATGAACGACACCGTCTCCATCGGAAGTTCGCCGCGCAGGATCCGGCAGAACAATATCGTCGCCGCCTTGCAGACGATCTA
TGTCCACCGAAGCCTCAGCCGGGCCGATCTCGCCCGCAAGCTCGGCATGAACCGCTCATCCTCGGGAGAGATCGTCGCCG
AACTGACCGAGGGCGGATTCGTTCAGGAGTCGGAGGAGAGCGGCAAGCAGCGTCTGGAGCATTCCCGTGCCGGCCGTCCC
GGCATCATGCTCGAACTGGTTCCGGATGCTGCCTTCTTCGTCGGGATCGAGATCGGCGTCGAACATATATCGGCTGTCGT
TGTCGATCTCTCCGCCGAAGTTCGGGCCTGTCGGAAAGTCGCCTTCGACACACCGTCTTCGACGGTGGAGGAGGCCGTGG
CGCAGGGTATCGAACTGATTGTCGGCGCGATGGCGAAGCGAATGATCGACAGGTGCAAAGGCTTGGGCCTATCGACGCCG
TCCCACGTGCGCCCAGATGGATTTGTCACGCTGGCGCCGATCATCGGCTGGCGGGACGTGCCGTTGAAGGACATTGCCCG
GTCAGCCTTCCCGGCCGCCGTGCCGATCGCGGTCGAAAACGATGCCAATGCGTTTGCGATCGGCGACAGCTATCGTCACG
GCGTCGCAGGGGTGACCCTGTTTCTGCTGATGGAAACGGGCGTCGGCGGCGGCATCATGATCGATGGCAAGCTGTTTCGC
GGCGGCCACGGTCTGGCGGGAGAAATCGGCCACACCCTGGTGCCGGGAAGCGGCGGCCAGAAGCTCGAACAACTGATCGG
TCGCGAGGTGCTGATCGGCCAGTATCGCGAGGCTGTTGGACGTGAGGACGCCGATCTGCAGGATTTCCTCGGTGGCGTTC
GCGATCGCGTCCCGGCCGCGGTCAACATCGCCGAAACCTGGTCGCGCCATCTTGCATATGCATTGCTGCAGGCCTGTCGT
CTGCTCGACCCGGACAGGATCGTGCTGGGCGGCTCCGTGGCACCGCTCTATCCGATGGTGGCTGCCCGCGTGGCGGTCCA
CATGTCGGAAGGCCAGAACATCGCTTTCCCCACGCCGGAGATCGTCGTGGACGATGATGCGGAGTTCGATTCCGCCTTCG
GGGCGGCATGCATGCTGCACCGGCGCTTTCTGTCGCTGGAGAACGAGGAGTTCGGCAGCGAGGACAGTGCGCCGGTCCAA
TCGGCGCTGAGTTAA

Upstream 100 bases:

>100_bases
GAGGCCAAGCGTCGCCGCGCCACAAACGCGCGGCCCTGATTATCCTTCTGACAGCCTGTTCCAGTCGTGTAAGGGTGGGC
GGCTTGAAGGGAATAGACAT

Downstream 100 bases:

>100_bases
GAGACAACAGGGATCGAAAGCAGGACTGCATATGGCTTCAATACTGGCTCCGGACGCACTTGGTCCCACGGTTTGCGTAG
GGGAGATCCTCGTGGAGATC

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MNDTVSIGSSPRRIRQNNIVAALQTIYVHRSLSRADLARKLGMNRSSSGEIVAELTEGGFVQESEESGKQRLEHSRAGRP
GIMLELVPDAAFFVGIEIGVEHISAVVVDLSAEVRACRKVAFDTPSSTVEEAVAQGIELIVGAMAKRMIDRCKGLGLSTP
SHVRPDGFVTLAPIIGWRDVPLKDIARSAFPAAVPIAVENDANAFAIGDSYRHGVAGVTLFLLMETGVGGGIMIDGKLFR
GGHGLAGEIGHTLVPGSGGQKLEQLIGREVLIGQYREAVGREDADLQDFLGGVRDRVPAAVNIAETWSRHLAYALLQACR
LLDPDRIVLGGSVAPLYPMVAARVAVHMSEGQNIAFPTPEIVVDDDAEFDSAFGAACMLHRRFLSLENEEFGSEDSAPVQ
SALS

Sequences:

>Translated_404_residues
MNDTVSIGSSPRRIRQNNIVAALQTIYVHRSLSRADLARKLGMNRSSSGEIVAELTEGGFVQESEESGKQRLEHSRAGRP
GIMLELVPDAAFFVGIEIGVEHISAVVVDLSAEVRACRKVAFDTPSSTVEEAVAQGIELIVGAMAKRMIDRCKGLGLSTP
SHVRPDGFVTLAPIIGWRDVPLKDIARSAFPAAVPIAVENDANAFAIGDSYRHGVAGVTLFLLMETGVGGGIMIDGKLFR
GGHGLAGEIGHTLVPGSGGQKLEQLIGREVLIGQYREAVGREDADLQDFLGGVRDRVPAAVNIAETWSRHLAYALLQACR
LLDPDRIVLGGSVAPLYPMVAARVAVHMSEGQNIAFPTPEIVVDDDAEFDSAFGAACMLHRRFLSLENEEFGSEDSAPVQ
SALS
>Mature_404_residues
MNDTVSIGSSPRRIRQNNIVAALQTIYVHRSLSRADLARKLGMNRSSSGEIVAELTEGGFVQESEESGKQRLEHSRAGRP
GIMLELVPDAAFFVGIEIGVEHISAVVVDLSAEVRACRKVAFDTPSSTVEEAVAQGIELIVGAMAKRMIDRCKGLGLSTP
SHVRPDGFVTLAPIIGWRDVPLKDIARSAFPAAVPIAVENDANAFAIGDSYRHGVAGVTLFLLMETGVGGGIMIDGKLFR
GGHGLAGEIGHTLVPGSGGQKLEQLIGREVLIGQYREAVGREDADLQDFLGGVRDRVPAAVNIAETWSRHLAYALLQACR
LLDPDRIVLGGSVAPLYPMVAARVAVHMSEGQNIAFPTPEIVVDDDAEFDSAFGAACMLHRRFLSLENEEFGSEDSAPVQ
SALS

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=392, Percent_Identity=21.9387755102041, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43113; Mature: 43113

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTVSIGSSPRRIRQNNIVAALQTIYVHRSLSRADLARKLGMNRSSSGEIVAELTEGGF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
VQESEESGKQRLEHSRAGRPGIMLELVPDAAFFVGIEIGVEHISAVVVDLSAEVRACRKV
CCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
AFDTPSSTVEEAVAQGIELIVGAMAKRMIDRCKGLGLSTPSHVRPDGFVTLAPIIGWRDV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCC
PLKDIARSAFPAAVPIAVENDANAFAIGDSYRHGVAGVTLFLLMETGVGGGIMIDGKLFR
CHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCEEEE
GGHGLAGEIGHTLVPGSGGQKLEQLIGREVLIGQYREAVGREDADLQDFLGGVRDRVPAA
CCCCCCCCCCCEECCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
VNIAETWSRHLAYALLQACRLLDPDRIVLGGSVAPLYPMVAARVAVHMSEGQNIAFPTPE
EEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCC
IVVDDDAEFDSAFGAACMLHRRFLSLENEEFGSEDSAPVQSALS
EEECCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHCC
>Mature Secondary Structure
MNDTVSIGSSPRRIRQNNIVAALQTIYVHRSLSRADLARKLGMNRSSSGEIVAELTEGGF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
VQESEESGKQRLEHSRAGRPGIMLELVPDAAFFVGIEIGVEHISAVVVDLSAEVRACRKV
CCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
AFDTPSSTVEEAVAQGIELIVGAMAKRMIDRCKGLGLSTPSHVRPDGFVTLAPIIGWRDV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCC
PLKDIARSAFPAAVPIAVENDANAFAIGDSYRHGVAGVTLFLLMETGVGGGIMIDGKLFR
CHHHHHHHCCCCEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCEEEE
GGHGLAGEIGHTLVPGSGGQKLEQLIGREVLIGQYREAVGREDADLQDFLGGVRDRVPAA
CCCCCCCCCCCEECCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
VNIAETWSRHLAYALLQACRLLDPDRIVLGGSVAPLYPMVAARVAVHMSEGQNIAFPTPE
EEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCC
IVVDDDAEFDSAFGAACMLHRRFLSLENEEFGSEDSAPVQSALS
EEECCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]