Click here to switch to the map view.

The map label for this gene is ycjR [C]

Identifier: 209547868

GI number: 209547868

Start: 264166

End: 265050

Strand: Direct

Name: ycjR [C]

Synonym: Rleg2_0259

Alternate gene names: 209547868

Gene position: 264166-265050 (Clockwise)

Preceding gene: 209547861

Following gene: 209547869

Centisome position: 5.82

GC content: 60.56

Gene sequence:

>885_bases
ATGCGTCGATTGGGTATCCATTCATTTGTATGGACAGGCGGCCAAACGCAGGAAGGCCTGGAAATGGCCCTCAACAAGAC
CGCCGAACACGGATATCGCACCATCGAATTTGCATATCTGCGCCCCGAGAAATTCAATCTCGACCGGCTGGCAAAGGTCG
CCCAGTCCCTCGATGTGGAGATCGGCGTGACCATGGGCCTGCCGCTCGACAAGGACGTGTCGAGCGAGGACGCTGCTGCG
GTGTCCGCCGGCAGGCAGACGCTGGCCGACGCCGTTCGTGCGGTCCGCGATATCGGCGGCAACAAGCTCGGCGGGATTCT
CTATTCCGCCCACACCAAGTACAATCGCCAGCCGACGAAGAAGGGCTGGGACAACAGCGTCGCCGCGATCACTGCAACCG
GCGAGGTCGCCAGGCAGGCGAACGTCGACCTGGTGCTGGAGGTCGTCAACCGGTTCGAGACGAACCTGCTGAATACCACG
GCGCAGGGGCTCAAGTTCATCTCCGAGACCGGATCGCAGCATGTTCGTCTCCATCTCGACACGTTCCACATGAATATCGA
AGAAGCCAATCCGGCCGCCGCGATCCGTCTTGCCGGCGACAAGATCGGTTATTTCCACATCGGCGAAAGCAATCGCGGCT
ATCTCGGTGACGGCGTCATCGACTTCGATCGGATCTTCGACGCCCTGCTCGACATCGGCTACGAAAGAGACATCGTGTTC
GAGAGCTTCTCGACGACGGTCGTGGACGAAGGCCTGTCGCTCGCCTGTGCGATCTGGCGCGATACCTGGGAGGATAATGA
TTTGCTTGCGGCGCACGCCAAGCGCTACATCGAGCTGAAATATGACGAGGCCAAGCGTCGCCGCGCCACAAACGCGCGGC
CCTGA

Upstream 100 bases:

>100_bases
GCAGCAACAAAATGGCAGTGTCGAAATTTATTTGTTGTCTTGCCAAACTAAATGGCATAGCACTGAGCGCAATCACCGGC
ATTTCGTGGAGGAAAAACCT

Downstream 100 bases:

>100_bases
TTATCCTTCTGACAGCCTGTTCCAGTCGTGTAAGGGTGGGCGGCTTGAAGGGAATAGACATATGAACGACACCGTCTCCA
TCGGAAGTTCGCCGCGCAGG

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRRLGIHSFVWTGGQTQEGLEMALNKTAEHGYRTIEFAYLRPEKFNLDRLAKVAQSLDVEIGVTMGLPLDKDVSSEDAAA
VSAGRQTLADAVRAVRDIGGNKLGGILYSAHTKYNRQPTKKGWDNSVAAITATGEVARQANVDLVLEVVNRFETNLLNTT
AQGLKFISETGSQHVRLHLDTFHMNIEEANPAAAIRLAGDKIGYFHIGESNRGYLGDGVIDFDRIFDALLDIGYERDIVF
ESFSTTVVDEGLSLACAIWRDTWEDNDLLAAHAKRYIELKYDEAKRRRATNARP

Sequences:

>Translated_294_residues
MRRLGIHSFVWTGGQTQEGLEMALNKTAEHGYRTIEFAYLRPEKFNLDRLAKVAQSLDVEIGVTMGLPLDKDVSSEDAAA
VSAGRQTLADAVRAVRDIGGNKLGGILYSAHTKYNRQPTKKGWDNSVAAITATGEVARQANVDLVLEVVNRFETNLLNTT
AQGLKFISETGSQHVRLHLDTFHMNIEEANPAAAIRLAGDKIGYFHIGESNRGYLGDGVIDFDRIFDALLDIGYERDIVF
ESFSTTVVDEGLSLACAIWRDTWEDNDLLAAHAKRYIELKYDEAKRRRATNARP
>Mature_294_residues
MRRLGIHSFVWTGGQTQEGLEMALNKTAEHGYRTIEFAYLRPEKFNLDRLAKVAQSLDVEIGVTMGLPLDKDVSSEDAAA
VSAGRQTLADAVRAVRDIGGNKLGGILYSAHTKYNRQPTKKGWDNSVAAITATGEVARQANVDLVLEVVNRFETNLLNTT
AQGLKFISETGSQHVRLHLDTFHMNIEEANPAAAIRLAGDKIGYFHIGESNRGYLGDGVIDFDRIFDALLDIGYERDIVF
ESFSTTVVDEGLSLACAIWRDTWEDNDLLAAHAKRYIELKYDEAKRRRATNARP

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=107, Percent_Identity=34.5794392523364, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786718, Length=248, Percent_Identity=23.3870967741935, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 32644; Mature: 32644

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLGIHSFVWTGGQTQEGLEMALNKTAEHGYRTIEFAYLRPEKFNLDRLAKVAQSLDVE
CCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCEE
IGVTMGLPLDKDVSSEDAAAVSAGRQTLADAVRAVRDIGGNKLGGILYSAHTKYNRQPTK
EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
KGWDNSVAAITATGEVARQANVDLVLEVVNRFETNLLNTTAQGLKFISETGSQHVRLHLD
CCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
TFHMNIEEANPAAAIRLAGDKIGYFHIGESNRGYLGDGVIDFDRIFDALLDIGYERDIVF
EEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEE
ESFSTTVVDEGLSLACAIWRDTWEDNDLLAAHAKRYIELKYDEAKRRRATNARP
HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHEEEEEECHHHHHCCCCCCC
>Mature Secondary Structure
MRRLGIHSFVWTGGQTQEGLEMALNKTAEHGYRTIEFAYLRPEKFNLDRLAKVAQSLDVE
CCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCEE
IGVTMGLPLDKDVSSEDAAAVSAGRQTLADAVRAVRDIGGNKLGGILYSAHTKYNRQPTK
EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
KGWDNSVAAITATGEVARQANVDLVLEVVNRFETNLLNTTAQGLKFISETGSQHVRLHLD
CCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
TFHMNIEEANPAAAIRLAGDKIGYFHIGESNRGYLGDGVIDFDRIFDALLDIGYERDIVF
EEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEE
ESFSTTVVDEGLSLACAIWRDTWEDNDLLAAHAKRYIELKYDEAKRRRATNARP
HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHEEEEEECHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA