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The map label for this gene is yddU [C]

Identifier: 209547837

GI number: 209547837

Start: 234691

End: 236652

Strand: Direct

Name: yddU [C]

Synonym: Rleg2_0228

Alternate gene names: 209547837

Gene position: 234691-236652 (Clockwise)

Preceding gene: 209547836

Following gene: 209547838

Centisome position: 5.17

GC content: 61.06

Gene sequence:

>1962_bases
ATGAAGAAGTTTCTGGCCTCATTGCAGCTGCAAAAAGACAACCCGACGCTTCTGACGGCGCAGTTTCGGGCTCTGTCGTC
GCAGATCCCCATTCTCTATGTTCTCCTGGTCATCAACGCCCTTGCGGTGGCGATCACCCACCTTGAATCCGCGCCGCTCT
GGCTCTCGCTCTATATCCCTGTCGCCTTGAGCATCGTCTGTGTCTTCCGACTCTGCTGGTGGGAGATCAGGGGCAAGGAG
AACGTCACAGCCGAGCGCGCCTACCGGCTGATGAAGATCACCATATCGGGCGCCGCTATCCTGACCATCGCTTTCGGCGG
CTGGGCGATCGCGCTTTACCAGTATGGCGATGCGTCTCAGCAGGGCCAGATCGCCTATTTCCTCGTCGTCACCGGCATTT
CCTGCATCTTTTGCCTGATGCATCTGCCGATGGCGGCAGCGCTGACGACGGTCATCACCTTCTCGGCCATGATCGCCACC
TTCATGTTCTCGGGCAATCCTGTTTTCGTCGCGACGGCCGTCAGCGGCCTCTTCCTGATCGTGCCCTTCCTCAGGGTGAT
CGACAGCTATTTCCAGAATTTCGTCGGCCTGGTGCAATTGACCGAGGAGCTGAAGCAGAAGCGGGCGGAAGCCGAGGAGC
TCAACCTCGTCAACAGCCGCAACGCGCTGCAGGACCAGCTGACCGGCCTTGCCAATCGCCGCAGCTTCTTTCTCTCGCTG
GAAAAACGGCTGCAGAAGGATCCGTCCGCGCCGCCCGTTCTCGGCATTCTCGATCTCGACGGCTTCAAGCCCGTCAACGA
TGTTTTCGGCCATGCCGCCGGCGATCTTGTGCTCAAGGAGACGGCCCGCCGCTTCGCCGCACTGGTCGGCGAAGCGGGCA
TCGTCTCCCGCCTCGGCGGCGACGAGTTCGGCATCATTTTCCCCTGTTCGATGACACGCCAGGCGATTGCCGATCTCGGC
CAGGCGCTCTGCGCCGCGGTCCGCGACCCTTACGAAATCCCCGACGGCTCGGTCCGCGTTTTCGGTTCCTGCGGCATCGT
CTATCCCGAGATCGGCAGATACACCGCCGAGGATCTTTATGAGAAAGCCGATTTTGCCCTCTACCAGGTCAAGAGCAAGC
GCAGCAGCGGCGTCGAATTCTTCTCGGCCGAGCACGAGAAGATCCTGACCCAGCGCCACCTGATCGAACTCGAGCTGCAG
GCGAATGATTTTGCCAGCGAATTGAAACTCGAATATCAGCCGATCGTCGAATTGAAGAGCGGCCGCGTCGTCGGTTACGA
GGCGCTGGCCCGCTGGGACAGCGCCCGCTTCGGCCGCATCAGCCCCGAAGCTTTCATTCCCGCGGCCGAGCGCACCGCCG
TCATCGGCCGGATGACGCGCATCCTTTTTGCCAAGGCGCTCGAAGCGCTGGCAATCATTCCCCGCCACCTCAAGCTGTCC
TTCAATCTCTCGGCCCGCGATATTTGCGACCATGAGACATCGATGGCGCTGCTTGGCATGATCACTCGCTCCGGCATCGA
TCCCCGGCGCATCGAATTCGAGATCACCGAGACGGCGCTGCTCTCCGATTTCGACACCGCCGACAAGGTCATCGCAATGC
TGCGCGCGGCCGGCATCTCGATCGCGCTCGATGATTTCGGCACCGGCTATTCGAGCCTCAGCCATATCCACCGTCTCGGC
TTCGACAAGCTGAAGATCGACAAGGCCTTCGTGATGAATTTCGATCGCGACGCCCGTTGCATGAATATCACCCGCTCGGT
CGCCAATCTCTGCCAGAATCTCGGCATTGCCTCCGTTGCCGAAGGCGTCGAAAGCGAAGGGATCGCCGAGGGATTGAAGG
CGATGGGCGTTCGCCTGGCGCAGGGCTATCATTTCTCGCGGCCGCTGCCGCTGGAGCTTGCCATCGACTACGCCGCCCGC
TGCGAAGCCGAAGCCATTGCCCGCAATTCGCTGTCGGCCTGA

Upstream 100 bases:

>100_bases
CCGGCGTCGGACCGTTACCGCCCCATGCCTCGCATGCCGTCACGTGAATAAGGAATGATCAAGCTTTCTCTGGCCGGCTC
TGGCCGACGGAAAAGGGAAG

Downstream 100 bases:

>100_bases
GCGATCGATCTCGCCTGCTGTAAATCGACTGGAGCGACGCTGCATCGTCGTCTATTCATGGTTACGAGCCTTTCCTGGGC
AGAATGCTTCAATCGGATCA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MKKFLASLQLQKDNPTLLTAQFRALSSQIPILYVLLVINALAVAITHLESAPLWLSLYIPVALSIVCVFRLCWWEIRGKE
NVTAERAYRLMKITISGAAILTIAFGGWAIALYQYGDASQQGQIAYFLVVTGISCIFCLMHLPMAAALTTVITFSAMIAT
FMFSGNPVFVATAVSGLFLIVPFLRVIDSYFQNFVGLVQLTEELKQKRAEAEELNLVNSRNALQDQLTGLANRRSFFLSL
EKRLQKDPSAPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFAALVGEAGIVSRLGGDEFGIIFPCSMTRQAIADLG
QALCAAVRDPYEIPDGSVRVFGSCGIVYPEIGRYTAEDLYEKADFALYQVKSKRSSGVEFFSAEHEKILTQRHLIELELQ
ANDFASELKLEYQPIVELKSGRVVGYEALARWDSARFGRISPEAFIPAAERTAVIGRMTRILFAKALEALAIIPRHLKLS
FNLSARDICDHETSMALLGMITRSGIDPRRIEFEITETALLSDFDTADKVIAMLRAAGISIALDDFGTGYSSLSHIHRLG
FDKLKIDKAFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVESEGIAEGLKAMGVRLAQGYHFSRPLPLELAIDYAAR
CEAEAIARNSLSA

Sequences:

>Translated_653_residues
MKKFLASLQLQKDNPTLLTAQFRALSSQIPILYVLLVINALAVAITHLESAPLWLSLYIPVALSIVCVFRLCWWEIRGKE
NVTAERAYRLMKITISGAAILTIAFGGWAIALYQYGDASQQGQIAYFLVVTGISCIFCLMHLPMAAALTTVITFSAMIAT
FMFSGNPVFVATAVSGLFLIVPFLRVIDSYFQNFVGLVQLTEELKQKRAEAEELNLVNSRNALQDQLTGLANRRSFFLSL
EKRLQKDPSAPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFAALVGEAGIVSRLGGDEFGIIFPCSMTRQAIADLG
QALCAAVRDPYEIPDGSVRVFGSCGIVYPEIGRYTAEDLYEKADFALYQVKSKRSSGVEFFSAEHEKILTQRHLIELELQ
ANDFASELKLEYQPIVELKSGRVVGYEALARWDSARFGRISPEAFIPAAERTAVIGRMTRILFAKALEALAIIPRHLKLS
FNLSARDICDHETSMALLGMITRSGIDPRRIEFEITETALLSDFDTADKVIAMLRAAGISIALDDFGTGYSSLSHIHRLG
FDKLKIDKAFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVESEGIAEGLKAMGVRLAQGYHFSRPLPLELAIDYAAR
CEAEAIARNSLSA
>Mature_653_residues
MKKFLASLQLQKDNPTLLTAQFRALSSQIPILYVLLVINALAVAITHLESAPLWLSLYIPVALSIVCVFRLCWWEIRGKE
NVTAERAYRLMKITISGAAILTIAFGGWAIALYQYGDASQQGQIAYFLVVTGISCIFCLMHLPMAAALTTVITFSAMIAT
FMFSGNPVFVATAVSGLFLIVPFLRVIDSYFQNFVGLVQLTEELKQKRAEAEELNLVNSRNALQDQLTGLANRRSFFLSL
EKRLQKDPSAPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFAALVGEAGIVSRLGGDEFGIIFPCSMTRQAIADLG
QALCAAVRDPYEIPDGSVRVFGSCGIVYPEIGRYTAEDLYEKADFALYQVKSKRSSGVEFFSAEHEKILTQRHLIELELQ
ANDFASELKLEYQPIVELKSGRVVGYEALARWDSARFGRISPEAFIPAAERTAVIGRMTRILFAKALEALAIIPRHLKLS
FNLSARDICDHETSMALLGMITRSGIDPRRIEFEITETALLSDFDTADKVIAMLRAAGISIALDDFGTGYSSLSHIHRLG
FDKLKIDKAFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVESEGIAEGLKAMGVRLAQGYHFSRPLPLELAIDYAAR
CEAEAIARNSLSA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=415, Percent_Identity=30.8433734939759, Blast_Score=178, Evalue=8e-46,
Organism=Escherichia coli, GI1787541, Length=445, Percent_Identity=27.8651685393258, Blast_Score=175, Evalue=7e-45,
Organism=Escherichia coli, GI87081743, Length=258, Percent_Identity=34.4961240310078, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI226510982, Length=444, Percent_Identity=27.4774774774775, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=33.0612244897959, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1788502, Length=225, Percent_Identity=34.6666666666667, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081845, Length=225, Percent_Identity=35.1111111111111, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=34.2105263157895, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1786507, Length=265, Percent_Identity=29.0566037735849, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788381, Length=456, Percent_Identity=26.0964912280702, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787055, Length=458, Percent_Identity=24.8908296943231, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=223, Percent_Identity=29.1479820627803, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082096, Length=231, Percent_Identity=31.6017316017316, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788956, Length=185, Percent_Identity=35.1351351351351, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87081977, Length=190, Percent_Identity=32.1052631578947, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=28.1818181818182, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=30.625, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=33.75, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=32.3529411764706, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787816, Length=209, Percent_Identity=29.6650717703349, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787802, Length=84, Percent_Identity=38.0952380952381, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 71824; Mature: 71824

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLASLQLQKDNPTLLTAQFRALSSQIPILYVLLVINALAVAITHLESAPLWLSLYIP
CCCHHHHHEEECCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHH
VALSIVCVFRLCWWEIRGKENVTAERAYRLMKITISGAAILTIAFGGWAIALYQYGDASQ
HHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEECCCEEEEEEECCEEEEEEECCCCCC
QGQIAYFLVVTGISCIFCLMHLPMAAALTTVITFSAMIATFMFSGNPVFVATAVSGLFLI
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
VPFLRVIDSYFQNFVGLVQLTEELKQKRAEAEELNLVNSRNALQDQLTGLANRRSFFLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
EKRLQKDPSAPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFAALVGEAGIVSRLGG
HHHHHCCCCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
DEFGIIFPCSMTRQAIADLGQALCAAVRDPYEIPDGSVRVFGSCGIVYPEIGRYTAEDLY
CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCHHHHH
EKADFALYQVKSKRSSGVEFFSAEHEKILTQRHLIELELQANDFASELKLEYQPIVELKS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCCHHEEECC
GRVVGYEALARWDSARFGRISPEAFIPAAERTAVIGRMTRILFAKALEALAIIPRHLKLS
CCEECHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEE
FNLSARDICDHETSMALLGMITRSGIDPRRIEFEITETALLSDFDTADKVIAMLRAAGIS
ECCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHHCCCE
IALDDFGTGYSSLSHIHRLGFDKLKIDKAFVMNFDRDARCMNITRSVANLCQNLGIASVA
EEECCCCCCHHHHHHHHHCCCCHHEECHHHEECCCCCHHHHHHHHHHHHHHHHCCHHHHH
EGVESEGIAEGLKAMGVRLAQGYHFSRPLPLELAIDYAARCEAEAIARNSLSA
HCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHCCHHHHHHCCCCC
>Mature Secondary Structure
MKKFLASLQLQKDNPTLLTAQFRALSSQIPILYVLLVINALAVAITHLESAPLWLSLYIP
CCCHHHHHEEECCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHH
VALSIVCVFRLCWWEIRGKENVTAERAYRLMKITISGAAILTIAFGGWAIALYQYGDASQ
HHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEECCCEEEEEEECCEEEEEEECCCCCC
QGQIAYFLVVTGISCIFCLMHLPMAAALTTVITFSAMIATFMFSGNPVFVATAVSGLFLI
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH
VPFLRVIDSYFQNFVGLVQLTEELKQKRAEAEELNLVNSRNALQDQLTGLANRRSFFLSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
EKRLQKDPSAPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFAALVGEAGIVSRLGG
HHHHHCCCCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
DEFGIIFPCSMTRQAIADLGQALCAAVRDPYEIPDGSVRVFGSCGIVYPEIGRYTAEDLY
CCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCHHHHH
EKADFALYQVKSKRSSGVEFFSAEHEKILTQRHLIELELQANDFASELKLEYQPIVELKS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCCHHEEECC
GRVVGYEALARWDSARFGRISPEAFIPAAERTAVIGRMTRILFAKALEALAIIPRHLKLS
CCEECHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEE
FNLSARDICDHETSMALLGMITRSGIDPRRIEFEITETALLSDFDTADKVIAMLRAAGIS
ECCCHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHHCCCE
IALDDFGTGYSSLSHIHRLGFDKLKIDKAFVMNFDRDARCMNITRSVANLCQNLGIASVA
EEECCCCCCHHHHHHHHHCCCCHHEECHHHEECCCCCHHHHHHHHHHHHHHHHCCHHHHH
EGVESEGIAEGLKAMGVRLAQGYHFSRPLPLELAIDYAARCEAEAIARNSLSA
HCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]