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The map label for this gene is rbsC [H]

Identifier: 209547760

GI number: 209547760

Start: 144978

End: 145952

Strand: Reverse

Name: rbsC [H]

Synonym: Rleg2_0149

Alternate gene names: 209547760

Gene position: 145952-144978 (Counterclockwise)

Preceding gene: 209547761

Following gene: 209547759

Centisome position: 3.22

GC content: 63.18

Gene sequence:

>975_bases
ATGACTGCCACCCCCACCGAAATCGTCGCGCCGCCGCCGCGCCGGAAAATGAACATCCTGTTCGGCCTGACGCTGATCGG
CCTGCTGGTCTTCCTCTGGGTCGTGCTCGGCCTGGTCACCCCGAGCTTCTGGACGCCGCTCAACATTTCGAACCTGCTGC
GTCAGGGCGCGATGACGGCGATCCTGGCGCTCGGCCAGACCTTCGTCATCATCACCGCCGGCATCGACCTTTCGGTCGGC
GCGATCGTCGGCTTCTGCACAGTCATCATCGCCTGGCTGCTGCAGGCGGGCGTGCCGCTCTGGGGAGCGATCATACTAAC
GCTGGCAATCGGTGTGGCGATCGGCGCCTTCCACGGCTTCGGCATCGTCCATATGGGCCTGCCGCCCTTCATCATCACGC
TGGCAACGCTGACATCGCTGCGCGGCATCGGCCTGTTGATCACCAACGGCTCGACGATCAGCATCACCGACGAGAGCTTC
AGCAATTTCGCGCGGGCCGATTTTCTCAGTATTCCGAGCCTGTTCTGGATGGTCATCCTGGTGGCGGTGCCCTCCTTCGT
CTTCCTGCATCTGAGCCGCTGGGGCCGCTATCTCTTCGCCGTCGGTTCGAATGCGGAAGCCGCGCGTCTTTCCGGCGTCA
ACGTCAAGGGCATGATCTACCTCGCCTATATCCTCTCGGCTGGCTTTGCCGCCTTCGTCGGCGTGCTGCTCGCCTCACGC
ATCGCCATCGGCAATGCGACGCAGGCCGACGGCTGGGAATTGCAGGCGATCGCGTCCTCCGTCATCGGCGGCACCAGCCT
GTTCGGCGCGGTCGGCTCGGTGCACGGGCCGCTGATCGGCGCCTTCATTCTCGCCACCATCAACAACGGCGCCAACCTTC
TGAACGTCAACTCCTTCTGGCAGCGCATCATCACCGGTCTCTTGATCATCGTGATCGTCTTCTTCGACCAGCTGCGCCGC
CGTAAGAGCAATTGA

Upstream 100 bases:

>100_bases
AAGTGCTTAGCGGTTTTGCGTCCGGAAATTGCGTGAGAACAAAGAGATAGAGAATTTCCGTCATTCGGAAAACGAAAATT
CTCTAAGAGGGAGAAAATTC

Downstream 100 bases:

>100_bases
GCGGCGAGCAGGAGATCGCCGCCTGCCCGCCCCTCATCCGCCTGCCGGCACCGTCCTTCGGACCCCCGCTCGCGGGGAGA
AGGGACCAGGCCGCAACCTC

Product: Monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTATPTEIVAPPPRRKMNILFGLTLIGLLVFLWVVLGLVTPSFWTPLNISNLLRQGAMTAILALGQTFVIITAGIDLSVG
AIVGFCTVIIAWLLQAGVPLWGAIILTLAIGVAIGAFHGFGIVHMGLPPFIITLATLTSLRGIGLLITNGSTISITDESF
SNFARADFLSIPSLFWMVILVAVPSFVFLHLSRWGRYLFAVGSNAEAARLSGVNVKGMIYLAYILSAGFAAFVGVLLASR
IAIGNATQADGWELQAIASSVIGGTSLFGAVGSVHGPLIGAFILATINNGANLLNVNSFWQRIITGLLIIVIVFFDQLRR
RKSN

Sequences:

>Translated_324_residues
MTATPTEIVAPPPRRKMNILFGLTLIGLLVFLWVVLGLVTPSFWTPLNISNLLRQGAMTAILALGQTFVIITAGIDLSVG
AIVGFCTVIIAWLLQAGVPLWGAIILTLAIGVAIGAFHGFGIVHMGLPPFIITLATLTSLRGIGLLITNGSTISITDESF
SNFARADFLSIPSLFWMVILVAVPSFVFLHLSRWGRYLFAVGSNAEAARLSGVNVKGMIYLAYILSAGFAAFVGVLLASR
IAIGNATQADGWELQAIASSVIGGTSLFGAVGSVHGPLIGAFILATINNGANLLNVNSFWQRIITGLLIIVIVFFDQLRR
RKSN
>Mature_323_residues
TATPTEIVAPPPRRKMNILFGLTLIGLLVFLWVVLGLVTPSFWTPLNISNLLRQGAMTAILALGQTFVIITAGIDLSVGA
IVGFCTVIIAWLLQAGVPLWGAIILTLAIGVAIGAFHGFGIVHMGLPPFIITLATLTSLRGIGLLITNGSTISITDESFS
NFARADFLSIPSLFWMVILVAVPSFVFLHLSRWGRYLFAVGSNAEAARLSGVNVKGMIYLAYILSAGFAAFVGVLLASRI
AIGNATQADGWELQAIASSVIGGTSLFGAVGSVHGPLIGAFILATINNGANLLNVNSFWQRIITGLLIIVIVFFDQLRRR
KSN

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=39.8026315789474, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=37.5415282392027, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790524, Length=296, Percent_Identity=36.1486486486487, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI145693152, Length=296, Percent_Identity=32.0945945945946, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87082395, Length=281, Percent_Identity=35.9430604982206, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788471, Length=324, Percent_Identity=39.1975308641975, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787793, Length=271, Percent_Identity=33.210332103321, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789992, Length=129, Percent_Identity=42.6356589147287, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI145693214, Length=249, Percent_Identity=32.9317269076305, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787794, Length=308, Percent_Identity=29.2207792207792, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34376; Mature: 34245

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATPTEIVAPPPRRKMNILFGLTLIGLLVFLWVVLGLVTPSFWTPLNISNLLRQGAMTA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ILALGQTFVIITAGIDLSVGAIVGFCTVIIAWLLQAGVPLWGAIILTLAIGVAIGAFHGF
HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GIVHMGLPPFIITLATLTSLRGIGLLITNGSTISITDESFSNFARADFLSIPSLFWMVIL
CEEECCCHHHHHHHHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
VAVPSFVFLHLSRWGRYLFAVGSNAEAARLSGVNVKGMIYLAYILSAGFAAFVGVLLASR
HHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IAIGNATQADGWELQAIASSVIGGTSLFGAVGSVHGPLIGAFILATINNGANLLNVNSFW
HHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH
QRIITGLLIIVIVFFDQLRRRKSN
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TATPTEIVAPPPRRKMNILFGLTLIGLLVFLWVVLGLVTPSFWTPLNISNLLRQGAMTA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ILALGQTFVIITAGIDLSVGAIVGFCTVIIAWLLQAGVPLWGAIILTLAIGVAIGAFHGF
HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GIVHMGLPPFIITLATLTSLRGIGLLITNGSTISITDESFSNFARADFLSIPSLFWMVIL
CEEECCCHHHHHHHHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
VAVPSFVFLHLSRWGRYLFAVGSNAEAARLSGVNVKGMIYLAYILSAGFAAFVGVLLASR
HHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IAIGNATQADGWELQAIASSVIGGTSLFGAVGSVHGPLIGAFILATINNGANLLNVNSFW
HHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHH
QRIITGLLIIVIVFFDQLRRRKSN
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]