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The map label for this gene is yckA [H]

Identifier: 209547731

GI number: 209547731

Start: 112330

End: 112989

Strand: Direct

Name: yckA [H]

Synonym: Rleg2_0120

Alternate gene names: 209547731

Gene position: 112330-112989 (Clockwise)

Preceding gene: 209547730

Following gene: 209547732

Centisome position: 2.48

GC content: 63.03

Gene sequence:

>660_bases
ATGAGCGGGTTTTTCGCACCCTACCGCGACTACGGTGGCGAATGGCTGCCCTTGTTGTTGCGAGCAATGGTGAATACGGC
AGTGCTTTCCGTGTGCGCCTTTGCTCTGGCGCTCGTGCTCGGTCTGTTGCTTTCGCTCTGCCAGAGATCAGGCTTAGCGG
CGCTACGCCATTTCGCGGCCCTTTATGTAACGGTCGTGCGCGGCGTGCCGCTGCTCGCGGTGCTGTTTCTGCTTTACTTC
GGCCTGCCGGGAATTGGGATCGTCTTCGATGCTTTCGGCGCGGCGCTCGCAGGTTTGGCGCTGTGTTTTGCGGCTCAGAT
CGCCGAACTCTTCCGGGCTGGACTGAAGGCGATCCCGGCGGGGCAGGGCGAGGCGGCCCTGGCCGTCGGTCTCACGCCGG
TTCAGAGCTTCCGGCTGATCATCTTCCCGCAGGTCGTCCGCGTCATCCTGGCCCCGATGATCGTCACCTTCGTCGCGCTT
CTCAAGGATTCCTCACTCGCATCGCTGATCACCGTCAACGAACTGGTTCTGACCGGCCGGGCGATGGCGACAGAGTATTT
CCTGCCGCTGCAGATCTATGTGGCGGTCGGCCTCTGCTACTTCGCGATCGCCTGGCCGTTTTCGGTCGTCTCCCGCCGGC
TTGCCGTGCCCGCCCGCTAA

Upstream 100 bases:

>100_bases
CGATGATCTACGCGACGGCGGCGGCACTCTATCTGCTGCTAAGCCTGCCATTGATGCAGGCGACGAAATTCCTCGAAAGG
CGTTACGGGAGACTGAAAGG

Downstream 100 bases:

>100_bases
TTCATCACAAGGTTCAGATCATGACCACCGATATGACCGTTGCCCCGGTCACCGCGTTTCCCGCCGGGCCGGCAGGCAAG
GCCCGCCCCTTCATTCTCAT

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSGFFAPYRDYGGEWLPLLLRAMVNTAVLSVCAFALALVLGLLLSLCQRSGLAALRHFAALYVTVVRGVPLLAVLFLLYF
GLPGIGIVFDAFGAALAGLALCFAAQIAELFRAGLKAIPAGQGEAALAVGLTPVQSFRLIIFPQVVRVILAPMIVTFVAL
LKDSSLASLITVNELVLTGRAMATEYFLPLQIYVAVGLCYFAIAWPFSVVSRRLAVPAR

Sequences:

>Translated_219_residues
MSGFFAPYRDYGGEWLPLLLRAMVNTAVLSVCAFALALVLGLLLSLCQRSGLAALRHFAALYVTVVRGVPLLAVLFLLYF
GLPGIGIVFDAFGAALAGLALCFAAQIAELFRAGLKAIPAGQGEAALAVGLTPVQSFRLIIFPQVVRVILAPMIVTFVAL
LKDSSLASLITVNELVLTGRAMATEYFLPLQIYVAVGLCYFAIAWPFSVVSRRLAVPAR
>Mature_218_residues
SGFFAPYRDYGGEWLPLLLRAMVNTAVLSVCAFALALVLGLLLSLCQRSGLAALRHFAALYVTVVRGVPLLAVLFLLYFG
LPGIGIVFDAFGAALAGLALCFAAQIAELFRAGLKAIPAGQGEAALAVGLTPVQSFRLIIFPQVVRVILAPMIVTFVALL
KDSSLASLITVNELVLTGRAMATEYFLPLQIYVAVGLCYFAIAWPFSVVSRRLAVPAR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=189, Percent_Identity=39.1534391534392, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787030, Length=209, Percent_Identity=32.5358851674641, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=29.0476190476191, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082239, Length=176, Percent_Identity=35.2272727272727, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786874, Length=158, Percent_Identity=34.1772151898734, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787087, Length=203, Percent_Identity=29.064039408867, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=29.3838862559242, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994930, Length=214, Percent_Identity=29.9065420560748, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787086, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23335; Mature: 23204

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFFAPYRDYGGEWLPLLLRAMVNTAVLSVCAFALALVLGLLLSLCQRSGLAALRHFAA
CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LYVTVVRGVPLLAVLFLLYFGLPGIGIVFDAFGAALAGLALCFAAQIAELFRAGLKAIPA
HHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GQGEAALAVGLTPVQSFRLIIFPQVVRVILAPMIVTFVALLKDSSLASLITVNELVLTGR
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AMATEYFLPLQIYVAVGLCYFAIAWPFSVVSRRLAVPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGFFAPYRDYGGEWLPLLLRAMVNTAVLSVCAFALALVLGLLLSLCQRSGLAALRHFAA
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LYVTVVRGVPLLAVLFLLYFGLPGIGIVFDAFGAALAGLALCFAAQIAELFRAGLKAIPA
HHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GQGEAALAVGLTPVQSFRLIIFPQVVRVILAPMIVTFVALLKDSSLASLITVNELVLTGR
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AMATEYFLPLQIYVAVGLCYFAIAWPFSVVSRRLAVPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]