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The map label for this gene is yecS [H]

Identifier: 209547730

GI number: 209547730

Start: 111674

End: 112333

Strand: Direct

Name: yecS [H]

Synonym: Rleg2_0119

Alternate gene names: 209547730

Gene position: 111674-112333 (Clockwise)

Preceding gene: 209547729

Following gene: 209547731

Centisome position: 2.46

GC content: 60.3

Gene sequence:

>660_bases
ATGAGCGGATTTTCGCTATTCTTCTCCGTCGTCCAGGGGCTTGCCGCCGGGCTTGGGGTAACCGTCCTGGTGACGCTGGC
CTCGCTGGCTTTTGCAATCGGCATCGGCTTCCTTCTCGCTCTCGTCAGGCAATTCACAGCGATCAGGGTCGTCAATCTGG
CGATCGACGCCTATTGCGAAATCCTCTGCAACGTGCCGGCCCTGACGCATCTGTTCATCCTCTATTTCGGGCTTGCCAGC
ATTGGCGTGAGGCTGACCTCGATTGCCGCCGCCATTCTGGGCCTCGGGCTGATCGGCGCAGCCATTACCTCATCGATCTT
CCGCGCCGGTTTCGCCTCTTTGCCAAAAGGCCAGGCGGAGGCGTCGCTTGCTGCAGGTCTGACGCCGCTCCAGACGATTT
TCGAAATCTTGACGCCGCAGGCCATGCGGATCGCGCTGCCGGCGCTCGGGAATTACGCGGTGCAGCTCCTCAAGGACACC
TCCGTCGTCTCGGCCATCGCGGCGCCTGAAATCATGTTCTTCGCCCGCTCCATGGTCACCTCGTCCTTCCAGACAACGAT
GATCTACGCGACGGCGGCGGCACTCTATCTGCTGCTAAGCCTGCCATTGATGCAGGCGACGAAATTCCTCGAAAGGCGTT
ACGGGAGACTGAAAGGATGA

Upstream 100 bases:

>100_bases
GCGGAAAGATCGTCGAGGCCGGACCGGCGCGCCAGGTTATTACCGCACCGCGCGAGGCACGTACGCAAGCCTTTCTCAAC
AAGATTCGGCACTAGGCGCC

Downstream 100 bases:

>100_bases
GCGGGTTTTTCGCACCCTACCGCGACTACGGTGGCGAATGGCTGCCCTTGTTGTTGCGAGCAATGGTGAATACGGCAGTG
CTTTCCGTGTGCGCCTTTGC

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSGFSLFFSVVQGLAAGLGVTVLVTLASLAFAIGIGFLLALVRQFTAIRVVNLAIDAYCEILCNVPALTHLFILYFGLAS
IGVRLTSIAAAILGLGLIGAAITSSIFRAGFASLPKGQAEASLAAGLTPLQTIFEILTPQAMRIALPALGNYAVQLLKDT
SVVSAIAAPEIMFFARSMVTSSFQTTMIYATAAALYLLLSLPLMQATKFLERRYGRLKG

Sequences:

>Translated_219_residues
MSGFSLFFSVVQGLAAGLGVTVLVTLASLAFAIGIGFLLALVRQFTAIRVVNLAIDAYCEILCNVPALTHLFILYFGLAS
IGVRLTSIAAAILGLGLIGAAITSSIFRAGFASLPKGQAEASLAAGLTPLQTIFEILTPQAMRIALPALGNYAVQLLKDT
SVVSAIAAPEIMFFARSMVTSSFQTTMIYATAAALYLLLSLPLMQATKFLERRYGRLKG
>Mature_218_residues
SGFSLFFSVVQGLAAGLGVTVLVTLASLAFAIGIGFLLALVRQFTAIRVVNLAIDAYCEILCNVPALTHLFILYFGLASI
GVRLTSIAAAILGLGLIGAAITSSIFRAGFASLPKGQAEASLAAGLTPLQTIFEILTPQAMRIALPALGNYAVQLLKDTS
VVSAIAAPEIMFFARSMVTSSFQTTMIYATAAALYLLLSLPLMQATKFLERRYGRLKG

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=203, Percent_Identity=33.0049261083744, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787030, Length=212, Percent_Identity=28.3018867924528, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788646, Length=206, Percent_Identity=28.1553398058252, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=28.448275862069, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=26.2135922330097, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082239, Length=206, Percent_Identity=27.6699029126214, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994930, Length=152, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=29.3023255813954, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23043; Mature: 22912

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFSLFFSVVQGLAAGLGVTVLVTLASLAFAIGIGFLLALVRQFTAIRVVNLAIDAYCE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILCNVPALTHLFILYFGLASIGVRLTSIAAAILGLGLIGAAITSSIFRAGFASLPKGQAE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ASLAAGLTPLQTIFEILTPQAMRIALPALGNYAVQLLKDTSVVSAIAAPEIMFFARSMVT
HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSFQTTMIYATAAALYLLLSLPLMQATKFLERRYGRLKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGFSLFFSVVQGLAAGLGVTVLVTLASLAFAIGIGFLLALVRQFTAIRVVNLAIDAYCE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILCNVPALTHLFILYFGLASIGVRLTSIAAAILGLGLIGAAITSSIFRAGFASLPKGQAE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ASLAAGLTPLQTIFEILTPQAMRIALPALGNYAVQLLKDTSVVSAIAAPEIMFFARSMVT
HHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSFQTTMIYATAAALYLLLSLPLMQATKFLERRYGRLKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]