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The map label for this gene is sigK [H]

Identifier: 209547684

GI number: 209547684

Start: 72029

End: 72568

Strand: Direct

Name: sigK [H]

Synonym: Rleg2_0072

Alternate gene names: 209547684

Gene position: 72029-72568 (Clockwise)

Preceding gene: 209547682

Following gene: 209547685

Centisome position: 1.59

GC content: 59.81

Gene sequence:

>540_bases
ATGCAAGGCGATGAGATTGCAGACCTGATCGGCCGCGTCGCGCTCCGCGACCGCAGGGCCTTTGTGGCCCTTTACAATCA
GACCGGGCCGAAACTTTTTGCCATCTGCCTGCGTATCTTGAAGGATCGCACGGAAGCCGAAGAAGCCCTGCAGGAAGTCT
ATATCAGCATCTGGCAGAGGGCCGGAAGCTACCAGTCAGCCACGGGTTCGTCCTCGGCCTGGTTGTCGGCGATCGCCCGT
AACCGGTCGATCGACGCGTTGCGGTCGCGCAAGCCGGTCGCCGACGAAATCGACAGTGCCTATGATCTTGCCGACGCCGC
GCCCGACCCGGAAATGCAGACGGTGACGAAGGATGAAGGAAGGCGGATTGACACCTGCATGGAAGAGTTGGAAGCTGATC
GTGCGGTCGCGGTGAAACGGGCTTATGTCGAAGGGCTGAGCTATCAGGAACTGGCCGATCAGTTTGGTGTCCCGCTGAAC
ACGATGCGGACCTGGCTCAGGCGCAGCCTGTTGAAACTGAGAGAGTGCATGGAACGATGA

Upstream 100 bases:

>100_bases
CGACAGAGGGAATAATCCAGAGGGCAATAGTTTTTCGTATCTGGCGCGGAGCCGGTGGCCTTTAGCGTCCGGCGCACCCA
AGCATGAGATGAGGAACGGC

Downstream 100 bases:

>100_bases
CATCGCCCGACAAAAGCAAGGGAGACCGCTCCCGCGACGAGGTTCTCGCCGGCGAATATGTGCTTGGCGTCCTGTCGCTG
CAGGACCGGCGGGTGGTGGA

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MQGDEIADLIGRVALRDRRAFVALYNQTGPKLFAICLRILKDRTEAEEALQEVYISIWQRAGSYQSATGSSSAWLSAIAR
NRSIDALRSRKPVADEIDSAYDLADAAPDPEMQTVTKDEGRRIDTCMEELEADRAVAVKRAYVEGLSYQELADQFGVPLN
TMRTWLRRSLLKLRECMER

Sequences:

>Translated_179_residues
MQGDEIADLIGRVALRDRRAFVALYNQTGPKLFAICLRILKDRTEAEEALQEVYISIWQRAGSYQSATGSSSAWLSAIAR
NRSIDALRSRKPVADEIDSAYDLADAAPDPEMQTVTKDEGRRIDTCMEELEADRAVAVKRAYVEGLSYQELADQFGVPLN
TMRTWLRRSLLKLRECMER
>Mature_179_residues
MQGDEIADLIGRVALRDRRAFVALYNQTGPKLFAICLRILKDRTEAEEALQEVYISIWQRAGSYQSATGSSSAWLSAIAR
NRSIDALRSRKPVADEIDSAYDLADAAPDPEMQTVTKDEGRRIDTCMEELEADRAVAVKRAYVEGLSYQELADQFGVPLN
TMRTWLRRSLLKLRECMER

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20262; Mature: 20262

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGDEIADLIGRVALRDRRAFVALYNQTGPKLFAICLRILKDRTEAEEALQEVYISIWQR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGSYQSATGSSSAWLSAIARNRSIDALRSRKPVADEIDSAYDLADAAPDPEMQTVTKDEG
CCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC
RRIDTCMEELEADRAVAVKRAYVEGLSYQELADQFGVPLNTMRTWLRRSLLKLRECMER
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQGDEIADLIGRVALRDRRAFVALYNQTGPKLFAICLRILKDRTEAEEALQEVYISIWQR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGSYQSATGSSSAWLSAIARNRSIDALRSRKPVADEIDSAYDLADAAPDPEMQTVTKDEG
CCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC
RRIDTCMEELEADRAVAVKRAYVEGLSYQELADQFGVPLNTMRTWLRRSLLKLRECMER
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA