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The map label for this gene is dapD [H]

Identifier: 209547674

GI number: 209547674

Start: 62465

End: 63325

Strand: Reverse

Name: dapD [H]

Synonym: Rleg2_0062

Alternate gene names: 209547674

Gene position: 63325-62465 (Counterclockwise)

Preceding gene: 209547676

Following gene: 209547673

Centisome position: 1.4

GC content: 64.58

Gene sequence:

>861_bases
ATGAGCGCCACCGACCTCGCATCCCTCGAAAAGACCATCGAAGCCGCCTTCGACAATCGCGACAATGTGAACACGTCGAC
CAAGGGCGAAGTTCGCGATGCGGTCGAAGCAGCGCTCGACCTGCTCGATGCCGGCAAGGTTCGTGTCGCAACACGCGGCG
CCGACGGCGCCTGGACGGTCAATCAGTGGCTGAAGAAGGCCGTGCTCCTGTCCTTCCGCCTCAACGACATGGACGTGGTC
AAGGGCGGCTCGGGCAATTCCACCTGGTGGGACAAGGTGCCTTCGAAATTCGAGGGCTGGGGCGAGAACCATTTCCGCGC
CGCCGGCTTTCGCGCCGTGCCGAACTGCGTCGTGCGCCGCTCGGCCTATATCGCCCCGAACGCCATCCTGATGCCCTCCT
TCGTCAACCTCGGCGCCTATGTCGGCGAAGGCACGATGGTCGACACCTGGGCGACGGTCGGCTCCTGCGCGCAGATCGGC
AAACATGTGCATCTCTCCGGCGGCGTCGGCATCGGCGGCGTGCTGGAGCCGATGCAGGCCGGCCCGACGATCATCGAAGA
CAATTGCTTCATCGGCGCCCGCTCCGAGGTGGTCGAAGGCTGCATCGTCCGCGAAGGCTCGGTGCTCGGCATGGGCGTCT
TTATCGGCAAGTCGACCAAGATCGTCGACCGCGCCACCGGCGAAGTGAGCTACGGCGAAGTGCCGCCCTATTCGGTCGTC
GTCGCCGGCTCGATGCCGTCGGGCAATGCGACCATGGGCAACGGCAAGCCGGCGCCGCATCTCTACTGCGCCGTCATCGT
CAAGCGCGTCGATGAACAGACCCGATCCAAGACCGGCATCAACGAGCTGCTCAGAGATTGA

Upstream 100 bases:

>100_bases
GTTCTACGGCTGCATGCTGTAGAGCAGGATAAATCCCTGCCAACCGCATTCCGGAGACTCCGCCGTCTCCACGATAAAGA
TCGAAGTTTAAGGAATTCTC

Downstream 100 bases:

>100_bases
TGACACCAGGACATTGATCCGGTAAACAGGCGGCGTCTTTTACGCGAGGCGCCGCCGCCTTGCCATGTCTTTGCCATTCC
CGCCGGATAGTTCGACGCCA

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSATDLASLEKTIEAAFDNRDNVNTSTKGEVRDAVEAALDLLDAGKVRVATRGADGAWTVNQWLKKAVLLSFRLNDMDVV
KGGSGNSTWWDKVPSKFEGWGENHFRAAGFRAVPNCVVRRSAYIAPNAILMPSFVNLGAYVGEGTMVDTWATVGSCAQIG
KHVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVSYGEVPPYSVV
VAGSMPSGNATMGNGKPAPHLYCAVIVKRVDEQTRSKTGINELLRD

Sequences:

>Translated_286_residues
MSATDLASLEKTIEAAFDNRDNVNTSTKGEVRDAVEAALDLLDAGKVRVATRGADGAWTVNQWLKKAVLLSFRLNDMDVV
KGGSGNSTWWDKVPSKFEGWGENHFRAAGFRAVPNCVVRRSAYIAPNAILMPSFVNLGAYVGEGTMVDTWATVGSCAQIG
KHVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVSYGEVPPYSVV
VAGSMPSGNATMGNGKPAPHLYCAVIVKRVDEQTRSKTGINELLRD
>Mature_285_residues
SATDLASLEKTIEAAFDNRDNVNTSTKGEVRDAVEAALDLLDAGKVRVATRGADGAWTVNQWLKKAVLLSFRLNDMDVVK
GGSGNSTWWDKVPSKFEGWGENHFRAAGFRAVPNCVVRRSAYIAPNAILMPSFVNLGAYVGEGTMVDTWATVGSCAQIGK
HVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVSYGEVPPYSVVV
AGSMPSGNATMGNGKPAPHLYCAVIVKRVDEQTRSKTGINELLRD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=281, Percent_Identity=60.8540925266904, Blast_Score=317, Evalue=5e-88,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30318; Mature: 30187

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATDLASLEKTIEAAFDNRDNVNTSTKGEVRDAVEAALDLLDAGKVRVATRGADGAWTV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
NQWLKKAVLLSFRLNDMDVVKGGSGNSTWWDKVPSKFEGWGENHFRAAGFRAVPNCVVRR
HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCHHHCCCCCCCEECCCCHHHHHHHHHH
SAYIAPNAILMPSFVNLGAYVGEGTMVDTWATVGSCAQIGKHVHLSGGVGIGGVLEPMQA
CCCCCCCCEECCHHHHHHHCCCCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHCHHHC
GPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVSYGEVPPYSVV
CCCEEECCCEECCHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCEEEE
VAGSMPSGNATMGNGKPAPHLYCAVIVKRVDEQTRSKTGINELLRD
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure 
SATDLASLEKTIEAAFDNRDNVNTSTKGEVRDAVEAALDLLDAGKVRVATRGADGAWTV
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
NQWLKKAVLLSFRLNDMDVVKGGSGNSTWWDKVPSKFEGWGENHFRAAGFRAVPNCVVRR
HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCHHHCCCCCCCEECCCCHHHHHHHHHH
SAYIAPNAILMPSFVNLGAYVGEGTMVDTWATVGSCAQIGKHVHLSGGVGIGGVLEPMQA
CCCCCCCCEECCHHHHHHHCCCCCCEEEHHHHHHHHHHHCCEEEECCCCCCCHHHCHHHC
GPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVSYGEVPPYSVV
CCCEEECCCEECCHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCEEEE
VAGSMPSGNATMGNGKPAPHLYCAVIVKRVDEQTRSKTGINELLRD
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA