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The map label for this gene is ihfB [H]

Identifier: 209547655

GI number: 209547655

Start: 44603

End: 44902

Strand: Reverse

Name: ihfB [H]

Synonym: Rleg2_0043

Alternate gene names: 209547655

Gene position: 44902-44603 (Counterclockwise)

Preceding gene: 209547656

Following gene: 209547654

Centisome position: 0.99

GC content: 61.67

Gene sequence:

>300_bases
GTGATCAAGTCCGAATTGGTGCAGATTGTTGCAGCGCGCAACCCGCATCTCTATCATCGCGACGTCGAGAATATCGTCAA
CGCGGTTCTCGACGAGATCACGGATGCACTGGCTGCGGGCAACCGCGTCGAATTGCGCGGCTTTGGCGCGTTTTCGGTCA
AGAACCGCCCGTCCCGCTCCGGCCGCAACCCGCGCACCGGCGATACCGTCTTCGTCGAGGAGAAGTGGGTTCCCTTCTTC
AAGACCGGCAAGGAGCTGCGCGAGCGGCTCAATCCCGGCCAGGCCGACGAAGAGGATTGA

Upstream 100 bases:

>100_bases
TCAATGGAATCCTGCCCCCAAAGTTGCTTCTTGACGGGCTGCTTTCAGTTTGGCAGGTTGGCCGCGATTGATAAGAAATC
AATAATTTAAGGGGGCGAAC

Downstream 100 bases:

>100_bases
TCGGCGCACGCCGCCTGCGGCGAATCCGCACTTGATCTCGAAGACCGTTTTCCTATTCTGCTAACGCATCGGCCCCGAAA
ATCGGAATCGATTTTCGGGG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEKWVPFF
KTGKELRERLNPGQADEED

Sequences:

>Translated_99_residues
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEKWVPFF
KTGKELRERLNPGQADEED
>Mature_99_residues
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEKWVPFF
KTGKELRERLNPGQADEED

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=49.4505494505495, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=35.2272727272727, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11191; Mature: 11191

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCC
GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGQADEED
CCCCCCCCEEEEECCCCCHHHCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCC
GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGQADEED
CCCCCCCCEEEEECCCCCHHHCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA