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The map label for this gene is ykgA [H]

Identifier: 209400009

GI number: 209400009

Start: 362185

End: 362826

Strand: Reverse

Name: ykgA [H]

Synonym: ECH74115_0352

Alternate gene names: 209400009

Gene position: 362826-362185 (Counterclockwise)

Preceding gene: 209395909

Following gene: 209398421

Centisome position: 6.51

GC content: 41.9

Gene sequence:

>642_bases
ATGCTTGATATTGCAATCTCTTTGCATTTTGATTCACAGCAGTCATTCAGCCGCGAATTTAAAAAGTTATTCGGCTGCTC
TCCCCGTGTATACCGCCACCGTGATTATTGGGATCTCGCAAATATCTTCCCTTCTTTTTTAATACGTCAACAGCAAAAGA
CGGAGTGTAGATTAGTCAACTTTCCTGAGACACCTATTTTTGGCAATTCATTTAAATATGATATTGAAGTGTCGAATAAA
TCACCGGATGAAGAAGTCAAACTGCGACGTCATCATTTAGCCAGATGTATGAAGAATTTTAAGACGGATATCTATTTCGT
CTCCACGTTTGAACCGTCAACAAAATCGGTCGATTTACTCACAGTTGAAACTTTTGCCGGTACGGTATGCAAACAAACCG
ATTCAGAGATGCCGAAAGAGTGGACAATTAACCGAGGACTGTATGCCTCTTTCCGCTATGAAGGTGAGTGGGAGCACTAC
CCTGAATGGGCGCGAAACCTCTATCTGATGGAATTACCCGCCAGGGGGTTAGCCAGAGTGAACGGCAGTGATATTGAGCG
GTTTTATTACAATGAAGATTTCGTAGAAAAGGATAGCAATGATGTTGTTTGCGAAATATTTATCCCTGTTCGTCCGGTTT
AG

Upstream 100 bases:

>100_bases
GCTTCTGTTCCGAAATTTCATGCATGTGCCTTTGGGAGAATACATTCGCAAACGAAGGCTTTGTCGTGCCGCCATTCTTG
TCCGGCTCACCGCGAAATCT

Downstream 100 bases:

>100_bases
CTGTCGCTATATCTAAATGAACTTATAACGAGACTACTGTCAGGCAATTCAATAAATAATGGCGTTGAAGATGTCAACGC
CATTATTGTTTATTAGAATG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLDIAISLHFDSQQSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIFGNSFKYDIEVSNK
SPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKQTDSEMPKEWTINRGLYASFRYEGEWEHY
PEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV

Sequences:

>Translated_213_residues
MLDIAISLHFDSQQSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIFGNSFKYDIEVSNK
SPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKQTDSEMPKEWTINRGLYASFRYEGEWEHY
PEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
>Mature_213_residues
MLDIAISLHFDSQQSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIFGNSFKYDIEVSNK
SPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLLTVETFAGTVCKQTDSEMPKEWTINRGLYASFRYEGEWEHY
PEWARNLYLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=219, Percent_Identity=29.6803652968037, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 25290; Mature: 25290

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIAISLHFDSQQSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVN
CEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
FPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLL
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEE
TVETFAGTVCKQTDSEMPKEWTINRGLYASFRYEGEWEHYPEWARNLYLMELPARGLARV
EEHHHHCHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCCHHHHHCEEEEECCCCCCEEC
NGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
CCCCCEEEECCCHHHCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MLDIAISLHFDSQQSFSREFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVN
CEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
FPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDIYFVSTFEPSTKSVDLL
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEE
TVETFAGTVCKQTDSEMPKEWTINRGLYASFRYEGEWEHYPEWARNLYLMELPARGLARV
EEHHHHCHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCCHHHHHCEEEEECCCCCCEEC
NGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
CCCCCEEEECCCHHHCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]