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The map label for this gene is rhsD [H]

Identifier: 209399453

GI number: 209399453

Start: 272333

End: 273841

Strand: Direct

Name: rhsD [H]

Synonym: ECH74115_0254

Alternate gene names: 209399453

Gene position: 272333-273841 (Clockwise)

Preceding gene: 209400992

Following gene: 209397206

Centisome position: 4.89

GC content: 55.33

Gene sequence:

>1509_bases
GTGGACGCCCTGCAAGGGAATTTCCCGTATGCAACAGACCCGGCAGGAAACCGGCTGCCGGACCCGGAACTGCACCCGGA
CAGCACCCTCACGGCATGGCCGGATAACCGCATCGCGGAAGATGCGCACTATGTCTACCGCTACGATGAATACGGCAGGC
TGGCGGAGAAGACGGACCGCATCCCGGAAGGGGTTATCCGGATGCACGACGAGCGCACCCACCACTATCACTACGACAGC
CAGCACCGCCTGGTGTTCCACACGCGGATACAGCACGGCGAACCACAGGTGGAGAGCCGGTACCTCTATGACCCGCTGGG
CCGCCGGACGGGAAAACGGGTGTGGCGGCGGGAGCGTGACCTGACGGGGTGGATGTCGCTGTCGCGTAAACCGGAGGAGA
CCTGGTACGGGTGGGACGGTGACAGGCTGACCACTGTACAGACCCAACAGACAAGAATCCAGACGGTATACCAGCCGGGA
AGCTTCACGCCGCTCCTGAGAATCGAAACAGAGAATGGTGAACAGGCGAAGGCGCGGCACCGTAGCCTGGCGGAGGTGTT
GCAGGAGGACACGGGTGTGACGCTACCGGCGGAGCTGGCGGTGATGCTGGGAAGGCTGGAGCGGGAGCTGCGGCAGGGCA
GCGTGAGTGAAGAAAGCCAGCAGTGGCTTGCGCAGTGCGGGCTGACGGCGGAGCAGATGGCCGCGCAGCTGGAGGCGGAA
TACATCCCGGAGAGGAAACTTCATCTTTACCACTGCGACCACCGGGGACTGCCGCTGGCGCTCATCAGCCCGGAAGGGGA
AACGGCGTGGCAGGGGGAGTATGACGAGTGGGGAAACCTGCTGGGCGAAACCAGCGCGCAGCACCTTCAACAGTCACTCC
GTCTGCCGGGGCAGCAGTATGATGAGGAGTTGGGGCTGTACTACAACCGCAACCGGTACTATGATCCGTTGCAGGGGAGA
TATATCACCCAGGACCCGATAGGGCTGGAGGGGGGATGGAACCTGTATCAGTACCCACTCAATCCTATTGAACATATAGA
TCCGTTGGGGTTAGCACTTGATTTGAATTATTATTCTCCGTCAGATCCTATATATAAAGGTTCTCTTAATGTAAGGGAAT
TTCCAACGGGTTTTACAGTTGGAGGTCATGGTTCGCCTACATCTATGAGTGATGACAGAATCAAAAAAGGAAGTGATCTG
ACAATAAAACAATTAGCTAGCGACATAAGAGCGAATCCTAAATATCATGAAGGTATGCCTGTAGTCTTGTTTTCCTGCGA
AACAGGAAAAGGCAAAAATTCATTTGCACAGAAACTAGCTAACGAACTTGATGCTACAGTGATTGCTCCTGATGAAATAA
TATGGATTTGGCCGGATGGAAACTATGCTATTATGGGGCAAACAGCTAGGATAACAATAGGCGGTAAGGACAACGGGGTG
TTTGAATTGGTGCCAGACGAGAAACAACCAGGGGACTTTCATAAGTTTACACCTACAGGAAGCAAATAG

Upstream 100 bases:

>100_bases
ATGAAAAATCACCCCGTTAAAATTTTTTATGAATCATTAACTAGTATTGTTGCTCCTTGTATGACAAAACCACAGCATGT
GCAGGAAATATGCACATGTT

Downstream 100 bases:

>100_bases
TAATGAAAGTATTTACTTTTTTGTTGATTATCATGGTATGTCTTTATAACTTTGGAGTGAGGGCTGCTATGGATAATTCA
AAACATTCTGATGAGGCGGA

Product: RhsG core protein with extension

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MDALQGNFPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDS
QHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPG
SFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAE
YIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQHLQQSLRLPGQQYDEELGLYYNRNRYYDPLQGR
YITQDPIGLEGGWNLYQYPLNPIEHIDPLGLALDLNYYSPSDPIYKGSLNVREFPTGFTVGGHGSPTSMSDDRIKKGSDL
TIKQLASDIRANPKYHEGMPVVLFSCETGKGKNSFAQKLANELDATVIAPDEIIWIWPDGNYAIMGQTARITIGGKDNGV
FELVPDEKQPGDFHKFTPTGSK

Sequences:

>Translated_502_residues
MDALQGNFPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDS
QHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPG
SFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAE
YIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQHLQQSLRLPGQQYDEELGLYYNRNRYYDPLQGR
YITQDPIGLEGGWNLYQYPLNPIEHIDPLGLALDLNYYSPSDPIYKGSLNVREFPTGFTVGGHGSPTSMSDDRIKKGSDL
TIKQLASDIRANPKYHEGMPVVLFSCETGKGKNSFAQKLANELDATVIAPDEIIWIWPDGNYAIMGQTARITIGGKDNGV
FELVPDEKQPGDFHKFTPTGSK
>Mature_502_residues
MDALQGNFPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDS
QHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPG
SFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAE
YIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQHLQQSLRLPGQQYDEELGLYYNRNRYYDPLQGR
YITQDPIGLEGGWNLYQYPLNPIEHIDPLGLALDLNYYSPSDPIYKGSLNVREFPTGFTVGGHGSPTSMSDDRIKKGSDL
TIKQLASDIRANPKYHEGMPVVLFSCETGKGKNSFAQKLANELDATVIAPDEIIWIWPDGNYAIMGQTARITIGGKDNGV
FELVPDEKQPGDFHKFTPTGSK

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=349, Percent_Identity=78.2234957020057, Blast_Score=575, Evalue=1e-165,
Organism=Escherichia coli, GI1786917, Length=349, Percent_Identity=73.6389684813754, Blast_Score=539, Evalue=1e-154,
Organism=Escherichia coli, GI48994942, Length=351, Percent_Identity=73.5042735042735, Blast_Score=538, Evalue=1e-154,
Organism=Escherichia coli, GI1790020, Length=355, Percent_Identity=72.6760563380282, Blast_Score=538, Evalue=1e-154,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 57325; Mature: 57325

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALQGNFPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECHHHHHHHHHHC
IPEGVIRMHDERTHHYHYDSQHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERD
CCHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHC
LTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARH
HHHHHHHCCCCCCCCCCCCCCEEEEEECHHHEEEEEECCCCCCEEEEEECCCCHHHHHHH
RSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
YIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQHLQQSLRLPGQQY
HCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHH
DEELGLYYNRNRYYDPLQGRYITQDPIGLEGGWNLYQYPLNPIEHIDPLGLALDLNYYSP
HHHCCEEECCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCHHHHCCCCCEEEEECCCCC
SDPIYKGSLNVREFPTGFTVGGHGSPTSMSDDRIKKGSDLTIKQLASDIRANPKYHEGMP
CCCEEECCCCCEECCCCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
VVLFSCETGKGKNSFAQKLANELDATVIAPDEIIWIWPDGNYAIMGQTARITIGGKDNGV
EEEEEECCCCCHHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEECEEEEEECCCCCCE
FELVPDEKQPGDFHKFTPTGSK
EEECCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MDALQGNFPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECHHHHHHHHHHC
IPEGVIRMHDERTHHYHYDSQHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERD
CCHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHC
LTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARH
HHHHHHHCCCCCCCCCCCCCCEEEEEECHHHEEEEEECCCCCCEEEEEECCCCHHHHHHH
RSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
YIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGETSAQHLQQSLRLPGQQY
HCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHH
DEELGLYYNRNRYYDPLQGRYITQDPIGLEGGWNLYQYPLNPIEHIDPLGLALDLNYYSP
HHHCCEEECCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCHHHHCCCCCEEEEECCCCC
SDPIYKGSLNVREFPTGFTVGGHGSPTSMSDDRIKKGSDLTIKQLASDIRANPKYHEGMP
CCCEEECCCCCEECCCCEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
VVLFSCETGKGKNSFAQKLANELDATVIAPDEIIWIWPDGNYAIMGQTARITIGGKDNGV
EEEEEECCCCCHHHHHHHHHHHCCCEEECCCCEEEEEECCCEEEEECEEEEEECCCCCCE
FELVPDEKQPGDFHKFTPTGSK
EEECCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]