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The map label for this gene is ydgC

Identifier: 209399051

GI number: 209399051

Start: 2187791

End: 2188126

Strand: Reverse

Name: ydgC

Synonym: ECH74115_2316

Alternate gene names: 209399051

Gene position: 2188126-2187791 (Counterclockwise)

Preceding gene: 209396648

Following gene: 209397404

Centisome position: 39.27

GC content: 47.32

Gene sequence:

>336_bases
ATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTGTTTTAGCAAAAACGAAAAATTATTA
TATCGCCGGGCTGATTCCACTTTTCCCGACCTTTGCGCTTATCGCGCATTATATTGTTGCCAGCGAACGCGGCATTGAAG
CCTTACGCGCAACCATCATTTTTAGTATGTGGTCGATTATTCCCTATTTTGTTTACCTGGTGTCGCTGTGGTATTTCACC
GGAATGATGCGCTTGCCCGCCGCTTTTGTTGGTTCTGTTGCGTGTTGGGGGATAAGCGCATGGGTGTTGATTATATGCTG
GATAAAGCTGCATTAA

Upstream 100 bases:

>100_bases
CAATACACCGCGCTGTTTTTACTTACTATCAATCGTTTCTAAACAAGTTTTCATCAGGTATTCTACTGATGACTTGTTAT
GGAAGTGTTAAGGTAAAAAG

Downstream 100 bases:

>100_bases
CGCAGATGACGACCGCCATCAAGTGGGAAACTGCGTCCGGTGACAAAGCAACTGGTAAGTAAGTAATCGACCAGGTCGAT
CACTTCTTTCTCGCCAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFT
GMMRLPAAFVGSVACWGISAWVLIICWIKLH

Sequences:

>Translated_111_residues
MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFT
GMMRLPAAFVGSVACWGISAWVLIICWIKLH
>Mature_110_residues
GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTG
MMRLPAAFVGSVACWGISAWVLIICWIKLH

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM

Homologues:

Organism=Escherichia coli, GI1787892, Length=111, Percent_Identity=100, Blast_Score=216, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDGC_ECO57 (P0ACX1)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A90918
- PIR:   F85766
- RefSeq:   NP_288042.1
- RefSeq:   NP_310340.1
- ProteinModelPortal:   P0ACX1
- EnsemblBacteria:   EBESCT00000027226
- EnsemblBacteria:   EBESCT00000055401
- GeneID:   912634
- GeneID:   961556
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2608
- KEGG:   ecs:ECs2313
- GeneTree:   EBGT00050000010876
- HOGENOM:   HBG639832
- OMA:   YFVYLAT
- ProtClustDB:   CLSK868091
- BioCyc:   ECOL83334:ECS2313-MONOMER
- InterPro:   IPR009707
- ProDom:   PD028709

Pfam domain/function: PF06942 GlpM

EC number: NA

Molecular weight: Translated: 12323; Mature: 12192

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x20c2b608)-; HASH(0x211953fc)-; HASH(0x21188cf8)-;

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796