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The map label for this gene is yihW [H]

Identifier: 209398202

GI number: 209398202

Start: 4974328

End: 4975137

Strand: Direct

Name: yihW [H]

Synonym: ECH74115_5331

Alternate gene names: 209398202

Gene position: 4974328-4975137 (Clockwise)

Preceding gene: 209397229

Following gene: 209396062

Centisome position: 89.27

GC content: 52.35

Gene sequence:

>810_bases
GTGATGGTTTTTCGAGGAATTTTCATGAGCCTTACCGAACTAACCGGTAACCCGCGGCACGACCAACTCCTCATGCTGAT
CGCCGAGCGTGGGTATATGAATATTGATGAGCTGGCAAATCTGCTGGATGTCTCCACGCAGACGGTGCGCCGGGATATTC
GTAAATTAAGCGAGCAAGGCCTGATTACGCGCCATCACGGTGGCGCGGGTCGGGCTTCCAGCGTCGTTAATACGGCGTTC
GAGCAGCGTGAGGTTTCGCAAACCGAGGAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAAC
AATATTTATCACCATTGGTACGACCGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCA
ACAGCCTGCGTGTGGCGCATATTCTTTACCACAACCCGCGCTTTGAAGTGATGGTACCCGGCGGTACGTTGCGCTCTCAT
AATAGCGGGATCATTGGCCCTTCAGCGGCGTCCTTTGTGGCCGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGC
GATTGAGAGCGATGGCGCGTTGATGGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAA
ATATCCTGCTGGTTGCCGATCACACTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACCGCG
CTCTTTACCGACGAGCTGCCGCCCGCTGCGCTAAAATCACGCTTACAAGACAGCCAAATTGAAATCATCCTTCCCCAGGA
AGACGCGTAG

Upstream 100 bases:

>100_bases
TGTAGCGGCGTCGAAATGCACGCGTCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCTTTTTTGTCAC
TTTTTGTATAAAATGCCAGG

Downstream 100 bases:

>100_bases
ATTTTTGTGACTGTTGACCTGGCTTCATACCTTGCCACATAGCCAAACCCATCCTTTCCCGCTACAGTTAATTTCTTGTG
GCGCGAAAGGAGGCAAAAAT

Product: transcriptional regulator, DeoR/GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MMVFRGIFMSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAF
EQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSH
NSGIIGPSAASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTA
LFTDELPPAALKSRLQDSQIEIILPQEDA

Sequences:

>Translated_269_residues
MMVFRGIFMSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAF
EQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSH
NSGIIGPSAASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTA
LFTDELPPAALKSRLQDSQIEIILPQEDA
>Mature_269_residues
MMVFRGIFMSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAF
EQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSH
NSGIIGPSAASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTA
LFTDELPPAALKSRLQDSQIEIILPQEDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082344, Length=261, Percent_Identity=100, Blast_Score=530, Evalue=1e-152,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=44.7154471544715, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1788069, Length=258, Percent_Identity=25.1937984496124, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=27.1653543307087, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=27.1653543307087, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=28.695652173913, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI226510968, Length=237, Percent_Identity=26.5822784810127, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787540, Length=247, Percent_Identity=25.1012145748988, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790753, Length=251, Percent_Identity=22.7091633466135, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790635, Length=234, Percent_Identity=23.9316239316239, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29490; Mature: 29490

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVFRGIFMSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQG
CEEHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LITRHHGGAGRASSVVNTAFEQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVA
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
RALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADY
HHHHCCCCEEEEECCCEEEEEEEECCCEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHH
LVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTA
HHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHEEEECCHHHHHH
LFTDELPPAALKSRLQDSQIEIILPQEDA
HHHCCCCHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure
MMVFRGIFMSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQG
CEEHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LITRHHGGAGRASSVVNTAFEQREVSQTEEKKAIAEAVADYIPDGSTIFITIGTTVEHVA
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
RALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADY
HHHHCCCCEEEEECCCEEEEEEEECCCEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHH
LVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTA
HHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHEEEECCHHHHHH
LFTDELPPAALKSRLQDSQIEIILPQEDA
HHHCCCCHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]