Click here to switch to the map view.

The map label for this gene is lpfC [H]

Identifier: 209397496

GI number: 209397496

Start: 4803732

End: 4806266

Strand: Reverse

Name: lpfC [H]

Synonym: ECH74115_5161

Alternate gene names: 209397496

Gene position: 4806266-4803732 (Counterclockwise)

Preceding gene: 209400508

Following gene: 209395769

Centisome position: 86.26

GC content: 48.48

Gene sequence:

>2535_bases
ATGGCCTCTTCGCATCTTTTCATTACGCTTGCATCGGGCATATGTCTGCTCTGTTCCATATCTGCTTTTGCCCGGGATAG
CTTGTTCAACCCCAGATTACTGGAACTGGATCATCCTGCGGATAATATTGATATTCACCAGTTCAACCGTTCGAATACCT
TACCTGCGGGAACATACAAAGTTGATGTGATGATCAACGGCATGCTCTTCGAACGCCAGGAAGTTAAATTCGCCCAGGAT
AACCCTGATGCTGAACTCCACCCATGCTACGTGGCGATAAAAAACGTGCTGGCGACCTATGGTATAAAAGTTGATGCGAT
AAAATCTCTGGCGAATGTTGATGACAAAACATGCGTAAATCCAGTTCCGCTGATCGACGGGGCTACCTGGTTACTGGACG
CCAGTAAACTTGCATTGAATATTACTATTCCGCAAATTTATCTCAACAATGCAGTTAATGGTTATATCAGCCCTTCCCGT
TGGGATCAGGGGATCAATGCCATGATGATGAATTATGATTTTTCGGCATCGCATACCATCCGGTCAAATTATGACGACGA
CGATGACAGTTATTATCTGAATTTGCGTAATGGTATTAATTTAGGCGCATGGCGTTTTCGTAATTACAGCACCCTGAATT
CTTATGACGGTAATGTGGACTACCATTCCGTCAGTAATTACATTCAGCGCGACATCATGGCATTACGTAGCCAGATTATG
ATTGGCGATACCTGGACGGCAAGCGATGTATTTGATAGTACACAGGTGCGTGGCGTGCGGCTGTATACCGATGACGATAT
GTTGCCCTCCAGCCAGAACGGCTTTGCGCCAGTGGTACATGGGATTGCGAAAACTAACGCCACGGTGATCATCAAACAAA
ACGGCTACGTTATTTATCAATCAGCCGTACCACAGGGCGCATTTGCCCTCACCGACTTAAACACGACCAGTAGCGGCGGC
GATCTCGATGTCACTATCAAAGAAGAAGATGGCAGCGAGCAGCACTTTATTCAGCCATTTACTTCACTGGCCATTCTCAA
GCGTGAAGGTCAGACCGATGTAGACCTTAGCATTGGAGAAGTGCGCGACGAAAGCGGCTTTACGCCTGAGGTCTTGCAGT
TACAAGCAATGCACGGTTTCCCTTTGGGAATAACTTTGTATGGCGGAACACAATTGGCAAATGATTACGCTTCTGCCGCG
CTGGGTATTGGTAAAGATATGGGGGCGCTGGGCGCGATTTCTTTTGACGTGACTCATGCCCGCTCGCAGTTTGACTACGA
CGATAATGAGAGTGGTCAATCGTATCGTTTTCTCTATTCCAAACGTTTTGAAGACACCAATACCACCTTTCGTCTGGTGG
GTTATCGCTACTCTATGGAGGGGTTCTACACCCTCAATGAATGGGTGTCGCGACAGGATAATGATTCTGATTTCTGGGTA
ACGGGCAACCGTCGCAGCCGCTTCGAAGGTACCTGGACGCAATCTTTCACGCCAGGCTGGGGCAATATTTATTTAACATT
CAGTCGACAGGAATACTGGCAGACCGATGAGGTCGAACGTTTATTACAGTTCGGCTATAACAACAACTGGCGAAACATCT
CCTGGAACGTTTCCTGGAACTATACGGACTCGATCAAGCGCTCATTGGGCAACCATCATGATGATAACAATGATGATTTC
GGCAAAGAACAGATTTTCATGTTCTCAATGTCGATACCGCTATCGTGCTGGATGGAAGACAGCTACGTCAACTATTCGTT
AACGCAAAACAACCACCATGAAAGCACGATGCAGGTCGGTCTGAACGGAACGATGCTGGAAGGGCGTAACCTGTCTTATA
ACGTACAGGAATCGTGGATGCACTCTCCTGATGACTCCTACAGCGGCAATGCCGGAATGACCTATGACGGGACTTATGGC
TCGGTCAATGGTAGCTATTCCTGGAGCCGTGACTCCCAACATTTTGATTATGGCGCCAGAGGCGGCGTGCTGGTGCATAG
TGACGGAGTGACCTTCTCGCAGGAACTGGGCGAAACGGTGGCATTGGTCAAAGCGCCGGGCGCAGAAGGCCTGTCCATTG
AAAACGCCACCGGGATTTCTACCGACTGGCGTGGTTATACCGTAAAAACGCAGCTTAGCCCGTATGACGAAAACCGCGTG
GCATTGAACAGCGACTATTTCTCCAAAGCCAATATTGAACTGGAAAACACCGTCATCAACCTGGTACCAACGCGCGGTGC
GGTGGTGAAAGCCGAATTTGTCACCCATGTCGGTTATCGCGTGCTATTTAACGTCCGCCAGGTCAACGGTAAACCAATAA
TGTTTGGCGCGATGGCAACCGCCTCTCTCGAAACGGGCACAGTCACCGGGATTGTCGGTGATAACGGCGAACTGTATCTC
TCCGGGATGCCTGAAAAAGGCGAGTTTTTATTGAGTTGGGGACAAGCTGCGGATGAAAAATGTAAGGCGGCCTATCACAT
CACCCATAAACCTGATGATACCAGCCTGGTTCAAATGGATGCGATTTGTCGCTAA

Upstream 100 bases:

>100_bases
CGTGGCAGGAAAATCGCTCGTTTGGCGCTTTATTAATGATTACGGTGCAATTAGTCAACCACTAAAGAAAAACCTTTAAG
CGCCGGATAAGGATATATCG

Downstream 100 bases:

>100_bases
AGGAAGCATGAATGAAAAAAATATTATCAGGGTTGATTCTGCTGCTTTGCTGTCCTTATGGTTTCGCCGCTAATGGTGAT
GGCGCAACGCACATGTCAAA

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 844; Mature: 843

Protein sequence:

>844_residues
MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQD
NPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSR
WDQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM
IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGG
DLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAA
LGIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV
TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDF
GKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYG
SVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV
ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYL
SGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR

Sequences:

>Translated_844_residues
MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQD
NPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSR
WDQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM
IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGG
DLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAA
LGIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV
TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDF
GKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYG
SVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV
ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYL
SGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR
>Mature_843_residues
ASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQDN
PDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRW
DQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIMI
GDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGGD
LDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAAL
GIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWVT
GNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDFG
KEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGS
VNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRVA
LNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYLS
GMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=869, Percent_Identity=37.9746835443038, Blast_Score=590, Evalue=1e-169,
Organism=Escherichia coli, GI1790772, Length=874, Percent_Identity=37.7574370709382, Blast_Score=587, Evalue=1e-169,
Organism=Escherichia coli, GI1786744, Length=875, Percent_Identity=37.1428571428571, Blast_Score=573, Evalue=1e-164,
Organism=Escherichia coli, GI1789533, Length=848, Percent_Identity=36.6745283018868, Blast_Score=506, Evalue=1e-144,
Organism=Escherichia coli, GI1786332, Length=872, Percent_Identity=31.7660550458716, Blast_Score=378, Evalue=1e-106,
Organism=Escherichia coli, GI1788427, Length=816, Percent_Identity=29.7794117647059, Blast_Score=332, Evalue=4e-92,
Organism=Escherichia coli, GI87081778, Length=859, Percent_Identity=30.7334109429569, Blast_Score=268, Evalue=1e-72,
Organism=Escherichia coli, GI1789610, Length=803, Percent_Identity=25.4047322540473, Blast_Score=132, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94346; Mature: 94215

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK
CCCCEEEEEECCCHHEEHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEE
VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN
EEEEEECEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI
CCCCCCCCEEEEECCEEEEEEEECEEEECCCCCCCCCHHHHCCCCEEEEEEECCCCCCEE
RSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM
CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEE
IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQ
ECCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEE
SAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGE
CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCEEEECC
VRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTHA
CCCCCCCCHHHEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEHH
RSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV
HHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCEEEHHHHHCCCCCCCCEEE
TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWN
ECCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHCCCCCCCCEEEEEEEEC
YTDSIKRSLGNHHDDNNDDFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVG
CHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEEECCCCCCCEEEEC
LNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGAR
CCCEEEECCCCEEEHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
GGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV
CCEEEEECCCEEHHHCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCEE
ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMAT
EECCCCCCCCCEEEECEEEEEEECCCCEEEEHHHHHCCEEEEEEEEECCCCEEEEEEEEE
ASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMD
CEECCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEC
AICR
CCCC
>Mature Secondary Structure 
ASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYK
CCCEEEEEECCCHHEEHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEE
VDVMINGMLFERQEVKFAQDNPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVN
EEEEEECEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
PVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTI
CCCCCCCCEEEEECCEEEEEEEECEEEECCCCCCCCCHHHHCCCCEEEEEEECCCCCCEE
RSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM
CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEE
IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQ
ECCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEE
SAVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGE
CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEECCCCCCCEEEECC
VRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTHA
CCCCCCCCHHHEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEHH
RSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV
HHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCEEEHHHHHCCCCCCCCEEE
TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWN
ECCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHCCCCCCCCEEEEEEEEC
YTDSIKRSLGNHHDDNNDDFGKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVG
CHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEEECCCCCCCEEEEC
LNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYGSVNGSYSWSRDSQHFDYGAR
CCCEEEECCCCEEEHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
GGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV
CCEEEEECCCEEHHHCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCEE
ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMAT
EECCCCCCCCCEEEECEEEEEEECCCCEEEEHHHHHCCEEEEEEEEECCCCEEEEEEEEE
ASLETGTVTGIVGDNGELYLSGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMD
CEECCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEC
AICR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]