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The map label for this gene is yfcU [H]

Identifier: 209396561

GI number: 209396561

Start: 3220670

End: 3223252

Strand: Reverse

Name: yfcU [H]

Synonym: ECH74115_3480

Alternate gene names: 209396561

Gene position: 3223252-3220670 (Counterclockwise)

Preceding gene: 209398661

Following gene: 209395716

Centisome position: 57.85

GC content: 54.55

Gene sequence:

>2583_bases
ATGTCCGGGAGTTATGTCAATGCCTGGGCTGAAAATGAAATTCAGTTTGATTCCCGTTTTCTGGAGTTAAAAGGCGACAC
AAAAATCGATCTGAAGCGATTTTCCAGCCAGGGTTATGTCGAACCTGGGAAATACAATTTACAGGTTCAACTAAATAAAC
AGCCGCTGACGGAAGAATACGATATTTACTGGTACGCCTCTGAGAACGATGCCAGTAAAACCTATGCCTGCCTGACGCCT
GAACTGGTCGCGCAGTTTGGCTTAAAAGAGGATGTGGCAAAAAACCTGCAATGGATCCACGACGGCAAATGCCTGAAACC
CGGTCAACTGGAAGGCATTGATATTAAAGCTGACCTGAGTCAGTCAGCGTTAGTCATTTCATTACCCCAGGCTTACCTTG
AATATACCGACATCAACTGGGATCCGCCTTCACGCTGGGATGACGGTATATCTGGTTTAATTGCTGACTACAGTATTACC
GCCCAGACACGACATGAAGAAAATGGCGGGGATGACAGCAATGAAATTAGCGGTAACGGGACGGTTGGGGTGAACCTCGG
CGCATGGCGTCTTCGTGCCGACTGGCAGACTGATTATTTGCATAGTAAAAGCAATGATGACGATGTTATCAACGGTGATG
ACACGCAAAAAAACTGGGAGTGGAGCCGCTACTACGCCTGGCGAGCCTTACCGTCGCTAAAAGCCAAACTTGGCCTTGGC
GAAGACTACCTGAATTCTGATATTTTCGACGGCTTTAACTACGTGGGTGGCAGTATCAGCACCGACGATCAAATGTTGCC
GCCGAATCTGCGCGGCTATGCGCCGGATATCTCCGGCGTGGCGCACACCACCGCGAAAGTGACCGTCAGCCAGTTGGGCC
GCGTCATCTACGAAACCCAGGTCCCGGCGGGGCCGTTCCGCATCCAGGATCTTGGCGATTCGGTCTCCGGTACGCTGCAT
ATCCGCATTGAAGAACAGAACGGTCAGGTGCAGGAATATGACATCAACACCGCCTCGATGCCGTTCCTGACTCGCCCCGG
CCAGGTGCGCTATAAACTGATGATGGGCCGCCCGCAGGAGTGGGGGCACCACGTGGAAGGCGGTTTCTTCTCCGGCGGCG
AAGCTTCCTGGGGGATTGCCAACGGCTGGTCGCTATACGGCGGGGCGCTGGCAGATGAACACTATCAGTCGGCGGCGCTT
GGCGTCGGTCGCGACCTGTCTGTGTTTGGTGCGGTGGCCTTTGATATCACCCACTCGCATACCCGTCTGGATAAAGAGAC
CGCCTACGGGAAAGGTTCACTGGACGGCAACTCGTTTCGCCTGAGCTATTCCAAAGACTTCGATGAACTGAACAGCCGCG
TCACTTTTGCCGGATACCGCTTCTCGGAAGAGAACTTCATGACCATGAGCGAGTATCTCGATGCCAGCGACAGCGAAATG
GTGCGCACCGGCAACGACAAAGAGATGTACACCGCCACCTATAACCAGAACTTCAGGGATGCCGGTGTGTCTGTTTATCT
CAACTACACCCGCCATACCTACTGGGATCGCGACGAACAGACCAACTACAACGTCATGCTCTCGCACTACTTCAACCTGG
GCAGTATCCGCAACATGAGCATTTCCATGACCGGATACCGCTACGAGTATGACAACCAGGCCGATAAAGGTGTGTACATA
TCGCTCAGTATGCCGTGGGGTGACAGCAGCACCATCAGCTATAACGGCAACTACGGCAGCGGTTCGGACAGCAGCCAGGT
GGGGTATTTCAGCCGTGTCGATGACGCAACCCATTACCAGTTGAACGTAGGCACCAGCGACAATCACTCCAGCGTTGACG
GTTATTACAGCCACGACGGATCGCTGGCGCAGGTCGATCTCAGCGCTAACTACCATGAAGGGCAGTACACCTCGGCGGGT
ATTTCCTTACAGGGCGGCGCGACGCTCACCGCACAAGGTGGCGCGCTCCACCGTACCCAGAATATGGGCGGTACGCGTCT
GCTGATTGATGCCGACGGTGTGGCTGGTGTTCCGGTGGAAGGAAATGGCGCGGCGGTTTACACCAATATGTTCGGTAAGG
CAGTGGTGGCAGACGTCAACAACTACTACCGCAACCAGGCGTATATCGACCTAAACAACCTGCCGGAAAACGCCGAAGCC
ACCCAGTCCGTGGTGCAGGCCACGCTTACCGAAGGGGCCATTGGCTACCGTAAGTTCTCGGTGATCAGCGGGCAAAAAGC
GATGGCGGTGCTGCGTCTGCAAGATGGCAGTTATCCGCCGTTTGGCGCGGAAGTGAAAAACGACAGCGCGCAGAACGTCG
GTCTGGTTGACGATGACGGCAACGTCTACCTCGCGGGCGTAAAACCTGGCGAGCATATGATCGTTTCATGGGGCGGTGTG
GCCCACTGCGATATTCATCTGCCTGACCCGCTGCCAGCCGATCTGTTCAATGGCCTGTTATTACCATGCCAGCAAACAGG
GGCGATATCTCCTTCGATGCCTCATGAAATTAAGCCGGTGATCCAGGAGCAGACCCAGCAGGTGATGCCAACGGAAGCGC
CAGTATCGGTATCAGCCAATTAA

Upstream 100 bases:

>100_bases
ATGGAATTCGCGCAAATTATAATAATTACGGATGGATACGTGTATGCCTGACCATTCTCTTTTCCGACTGCGGGTACTTC
CCTGCTGCGTTGCATTGGCA

Downstream 100 bases:

>100_bases
TAACGTGATTAAGGAATGATCCATGACGAATCTATTTTGCTCTGCCAGAACGGCCGCAACGACGCTGGCGTTACTGATAA
CTGCCGCCAGCCTGTCAGTA

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 860; Mature: 859

Protein sequence:

>860_residues
MSGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEYDIYWYASENDASKTYACLTP
ELVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLSQSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSIT
AQTRHEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRYYAWRALPSLKAKLGLG
EDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQVPAGPFRIQDLGDSVSGTLH
IRIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAAL
GVGRDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSEENFMTMSEYLDASDSEM
VRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMSISMTGYRYEYDNQADKGVYI
SLSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQLNVGTSDNHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAG
ISLQGGATLTAQGGALHRTQNMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEA
TQSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDGNVYLAGVKPGEHMIVSWGGV
AHCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPVIQEQTQQVMPTEAPVSVSAN

Sequences:

>Translated_860_residues
MSGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEYDIYWYASENDASKTYACLTP
ELVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLSQSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSIT
AQTRHEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRYYAWRALPSLKAKLGLG
EDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQVPAGPFRIQDLGDSVSGTLH
IRIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAAL
GVGRDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSEENFMTMSEYLDASDSEM
VRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMSISMTGYRYEYDNQADKGVYI
SLSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQLNVGTSDNHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAG
ISLQGGATLTAQGGALHRTQNMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEA
TQSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDGNVYLAGVKPGEHMIVSWGGV
AHCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPVIQEQTQQVMPTEAPVSVSAN
>Mature_859_residues
SGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEYDIYWYASENDASKTYACLTPE
LVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLSQSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSITA
QTRHEENGGDDSNEISGNGTVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRYYAWRALPSLKAKLGLGE
DYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQVPAGPFRIQDLGDSVSGTLHI
RIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQEWGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAALG
VGRDLSVFGAVAFDITHSHTRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSEENFMTMSEYLDASDSEMV
RTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMSISMTGYRYEYDNQADKGVYIS
LSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQLNVGTSDNHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAGI
SLQGGATLTAQGGALHRTQNMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEAT
QSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDGNVYLAGVKPGEHMIVSWGGVA
HCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPVIQEQTQQVMPTEAPVSVSAN

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=821, Percent_Identity=35.6881851400731, Blast_Score=501, Evalue=1e-143,
Organism=Escherichia coli, GI1787172, Length=841, Percent_Identity=27.1105826397146, Blast_Score=275, Evalue=6e-75,
Organism=Escherichia coli, GI1790772, Length=861, Percent_Identity=26.8292682926829, Blast_Score=271, Evalue=1e-73,
Organism=Escherichia coli, GI1789533, Length=852, Percent_Identity=27.3474178403756, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI1786332, Length=847, Percent_Identity=27.6269185360094, Blast_Score=256, Evalue=4e-69,
Organism=Escherichia coli, GI1786744, Length=846, Percent_Identity=26.5957446808511, Blast_Score=250, Evalue=3e-67,
Organism=Escherichia coli, GI1788427, Length=773, Percent_Identity=24.8382923673997, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI1789610, Length=824, Percent_Identity=23.5436893203883, Blast_Score=126, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94727; Mature: 94596

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEY
CCCCEEEECCCCCEEECEEEEEECCCCEEEHEECCCCCCCCCCEEEEEEEECCCCCCCCE
DIYWYASENDASKTYACLTPELVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLS
EEEEEECCCCCCCEEEEECHHHHHHCCCHHHHHHHCEEEECCCCCCCCCCCCEEEEECCC
QSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSITAQTRHEENGGDDSNEISGNG
CCEEEEECCHHHHEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC
TVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRYYAWRALPSLKAKLGLG
EEEEEECEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
EDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQ
HHHHCCHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEHHHHCCEEEEEC
VPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQE
CCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEECCCCEEEEEEECCCHH
WGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAALGVGRDLSVFGAVAFDITHSH
HCCCCCCCEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCH
TRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSEENFMTMSEYLDASDSEM
HHCCHHHCCCCCCCCCCEEEEEECCCHHHHCCEEEEEEEEECCCCCEEHHHHCCCCCCCC
VRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMS
EECCCCCEEEEEECCCCCCCCCEEEEEEECCCEECCCCCCCCCEEEEEEEECCCCCCEEE
ISMTGYRYEYDNQADKGVYISLSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQ
EEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCEEEE
LNVGTSDNHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAGISLQGGATLTAQGGALHRTQ
EECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCEEECCEEECCCEEEEECCCCEEEEC
NMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEA
CCCCEEEEEECCCCCCCEECCCCCEEEEECCCCEEEEHHHHHHCCEEEEEECCCCCCHHH
TQSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDG
HHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCC
NVYLAGVKPGEHMIVSWGGVAHCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPV
CEEEEEECCCCEEEEEECCEEEEEEECCCCCCHHHHCCEEEECCCCCCCCCCCCHHHHHH
IQEQTQQVMPTEAPVSVSAN
HHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure 
SGSYVNAWAENEIQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLTEEY
CCCEEEECCCCCEEECEEEEEECCCCEEEHEECCCCCCCCCCEEEEEEEECCCCCCCCE
DIYWYASENDASKTYACLTPELVAQFGLKEDVAKNLQWIHDGKCLKPGQLEGIDIKADLS
EEEEEECCCCCCCEEEEECHHHHHHCCCHHHHHHHCEEEECCCCCCCCCCCCEEEEECCC
QSALVISLPQAYLEYTDINWDPPSRWDDGISGLIADYSITAQTRHEENGGDDSNEISGNG
CCEEEEECCHHHHEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC
TVGVNLGAWRLRADWQTDYLHSKSNDDDVINGDDTQKNWEWSRYYAWRALPSLKAKLGLG
EEEEEECEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
EDYLNSDIFDGFNYVGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQLGRVIYETQ
HHHHCCHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEHHHHCCEEEEEC
VPAGPFRIQDLGDSVSGTLHIRIEEQNGQVQEYDINTASMPFLTRPGQVRYKLMMGRPQE
CCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEECCCCEEEEEEECCCHH
WGHHVEGGFFSGGEASWGIANGWSLYGGALADEHYQSAALGVGRDLSVFGAVAFDITHSH
HCCCCCCCEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCH
TRLDKETAYGKGSLDGNSFRLSYSKDFDELNSRVTFAGYRFSEENFMTMSEYLDASDSEM
HHCCHHHCCCCCCCCCCEEEEEECCCHHHHCCEEEEEEEEECCCCCEEHHHHCCCCCCCC
VRTGNDKEMYTATYNQNFRDAGVSVYLNYTRHTYWDRDEQTNYNVMLSHYFNLGSIRNMS
EECCCCCEEEEEECCCCCCCCCEEEEEEECCCEECCCCCCCCCEEEEEEEECCCCCCEEE
ISMTGYRYEYDNQADKGVYISLSMPWGDSSTISYNGNYGSGSDSSQVGYFSRVDDATHYQ
EEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCEEEE
LNVGTSDNHSSVDGYYSHDGSLAQVDLSANYHEGQYTSAGISLQGGATLTAQGGALHRTQ
EECCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCEEECCEEECCCEEEEECCCCEEEEC
NMGGTRLLIDADGVAGVPVEGNGAAVYTNMFGKAVVADVNNYYRNQAYIDLNNLPENAEA
CCCCEEEEEECCCCCCCEECCCCCEEEEECCCCEEEEHHHHHHCCEEEEEECCCCCCHHH
TQSVVQATLTEGAIGYRKFSVISGQKAMAVLRLQDGSYPPFGAEVKNDSAQNVGLVDDDG
HHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCC
NVYLAGVKPGEHMIVSWGGVAHCDIHLPDPLPADLFNGLLLPCQQTGAISPSMPHEIKPV
CEEEEEECCCCEEEEEECCEEEEEEECCCCCCHHHHCCEEEECCCCCCCCCCCCHHHHHH
IQEQTQQVMPTEAPVSVSAN
HHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]