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The map label for this gene is yfcS [H]

Identifier: 209395716

GI number: 209395716

Start: 3219889

End: 3220647

Strand: Reverse

Name: yfcS [H]

Synonym: ECH74115_3479

Alternate gene names: 209395716

Gene position: 3220647-3219889 (Counterclockwise)

Preceding gene: 209396561

Following gene: 209398183

Centisome position: 57.8

GC content: 52.83

Gene sequence:

>759_bases
ATGACGAATCTATTTTGCTCTGCCAGAACGGCCGCAACGACGCTGGCGTTACTGATAACTGCCGCCAGCCTGTCAGTACA
GGCCTCTGTCACGCCGGACCGTACACGCCTGATTTTTAACGAAAGTGATAAATCAATCAGCGTCACGCTGCGCAATAACG
ACCCGAAAATGCCGTATCTGGCACAAAGCTGGATGGAAGATGGACAGGGTAACAGGATTAGCTCGCCACTGACGGTCCTG
CCGCCAGTGCAGCGCATCGATTCCATGATGAACGGTCAGGTGAAGGTACAGGGCATGCCGGATATCAACAAGCTGCCTGC
CGACCGCGAGAGCGTGTTCTATTTCAACGTGCGTGAGATCCCGCCGAAATCGAACAAACCTAACACGCTACAGATAGCGC
TGCAGACGCGCATTAAGTTGTTCTGGCGACCAAAGGCGCTGGAAAACGTCAGCATGAAAAACCCGTGGCAGCATAAGGTG
ACCTTAACCCTCAGTGGTCAGGAGTTTACCGTCAATAACCCGACGCCGTACTTCGTGGTTATCAGTAACGCCAGTGCGCA
GAAAAATGGCAATCCGGCAGCGGGATTTTCCCCCATGGTGATATCGCCAAAAACCTCTGTGCCGTTAAAAGTCAAAATGG
ATAGCGTCCCGGTGCTGACCTATGTGAATGATTATGGTGCGCGTTTGCCGCTGTTCTTCCGCTGTACGGGAAATACCTGT
CAGGTGGACGAAGAGCAAAACAGCAAAGGCCAGGGATAG

Upstream 100 bases:

>100_bases
GAAATTAAGCCGGTGATCCAGGAGCAGACCCAGCAGGTGATGCCAACGGAAGCGCCAGTATCGGTATCAGCCAATTAATA
ACGTGATTAAGGAATGATCC

Downstream 100 bases:

>100_bases
GAGCAATAGCATGAAAGGAGCTTATTCGGCCTGGGCGTGGTTATTGCTGTGTAGCATTGTGAGCACGCCTGTAATGGCGG
GGAGTAAATCGGTTGCGATG

Product: chaperone protein PapD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTNLFCSARTAATTLALLITAASLSVQASVTPDRTRLIFNESDKSISVTLRNNDPKMPYLAQSWMEDGQGNRISSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENVSMKNPWQHKV
TLTLSGQEFTVNNPTPYFVVISNASAQKNGNPAAGFSPMVISPKTSVPLKVKMDSVPVLTYVNDYGARLPLFFRCTGNTC
QVDEEQNSKGQG

Sequences:

>Translated_252_residues
MTNLFCSARTAATTLALLITAASLSVQASVTPDRTRLIFNESDKSISVTLRNNDPKMPYLAQSWMEDGQGNRISSPLTVL
PPVQRIDSMMNGQVKVQGMPDINKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENVSMKNPWQHKV
TLTLSGQEFTVNNPTPYFVVISNASAQKNGNPAAGFSPMVISPKTSVPLKVKMDSVPVLTYVNDYGARLPLFFRCTGNTC
QVDEEQNSKGQG
>Mature_251_residues
TNLFCSARTAATTLALLITAASLSVQASVTPDRTRLIFNESDKSISVTLRNNDPKMPYLAQSWMEDGQGNRISSPLTVLP
PVQRIDSMMNGQVKVQGMPDINKLPADRESVFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALENVSMKNPWQHKVT
LTLSGQEFTVNNPTPYFVVISNASAQKNGNPAAGFSPMVISPKTSVPLKVKMDSVPVLTYVNDYGARLPLFFRCTGNTCQ
VDEEQNSKGQG

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=250, Percent_Identity=85.6, Blast_Score=430, Evalue=1e-122,
Organism=Escherichia coli, GI1786936, Length=233, Percent_Identity=36.480686695279, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87082203, Length=235, Percent_Identity=33.1914893617021, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1786333, Length=247, Percent_Identity=34.0080971659919, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787171, Length=226, Percent_Identity=34.070796460177, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788428, Length=221, Percent_Identity=33.0316742081448, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789532, Length=187, Percent_Identity=30.4812834224599, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790771, Length=231, Percent_Identity=29.8701298701299, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786743, Length=222, Percent_Identity=31.5315315315315, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27892; Mature: 27761

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLFCSARTAATTLALLITAASLSVQASVTPDRTRLIFNESDKSISVTLRNNDPKMPYL
CCCEEECCHHHHHHHHHHHHHHCEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHH
AQSWMEDGQGNRISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESVFYFNVREI
HHHHHHCCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PPKSNKPNTLQIALQTRIKLFWRPKALENVSMKNPWQHKVTLTLSGQEFTVNNPTPYFVV
CCCCCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCCCEEEEEEECCCEEEECCCCCEEEE
ISNASAQKNGNPAAGFSPMVISPKTSVPLKVKMDSVPVLTYVNDYGARLPLFFRCTGNTC
EECCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEECCCEE
QVDEEQNSKGQG
EECCCCCCCCCC
>Mature Secondary Structure 
TNLFCSARTAATTLALLITAASLSVQASVTPDRTRLIFNESDKSISVTLRNNDPKMPYL
CCEEECCHHHHHHHHHHHHHHCEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCHH
AQSWMEDGQGNRISSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESVFYFNVREI
HHHHHHCCCCCCCCCCEEECCCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEC
PPKSNKPNTLQIALQTRIKLFWRPKALENVSMKNPWQHKVTLTLSGQEFTVNNPTPYFVV
CCCCCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCCCEEEEEEECCCEEEECCCCCEEEE
ISNASAQKNGNPAAGFSPMVISPKTSVPLKVKMDSVPVLTYVNDYGARLPLFFRCTGNTC
EECCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEECCCEE
QVDEEQNSKGQG
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]