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The map label for this gene is nlpC [H]

Identifier: 209396057

GI number: 209396057

Start: 2298275

End: 2298739

Strand: Reverse

Name: nlpC [H]

Synonym: ECH74115_2426

Alternate gene names: 209396057

Gene position: 2298739-2298275 (Counterclockwise)

Preceding gene: 209396820

Following gene: 209397587

Centisome position: 41.25

GC content: 49.46

Gene sequence:

>465_bases
ATGCGTTTCTGCCTTATTTTGATCACAGCACTGTTTCTGGCCGGGTGTAGCCACCATAAAGCACCGCCGCCAAATGCCAG
ACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATGGCACGCCGTATCGTTATGGTG
GCATGACGCGGCGCGGTGTGGACTGTTCGGGATTTGTGGTTGTGACGATGCGCGATCGTTTCGATTTGCAGCTGCCCCGA
GAAACCAAAGAACAAGCCTCTATCGGCACGCAAATTGATAAAGACGAGTTGCTGCCTGGTGACCTGGTCTTTTTCAAAAC
GGGTTCCGGACAAAATGGTTTGCATGTAGGTATTTACGATACCAACAACCAATTTATCCACGCCTCTACCAGCAAGGGAG
TGATGCGTTCCTCACTTGATAATGTCTATTGGCAGAAAAATTTCTGGCAGGCGAGACGAATCTAG

Upstream 100 bases:

>100_bases
GAATGCTGATTTCGACCATCTGATTTCATTAGTATCTTGAAAATCGGGTAATTACGACGCTAAATTAATGCAAGAATAAA
AAACAGAGGAACCGTACGGA

Downstream 100 bases:

>100_bases
TATGTCGAAAATTGGACGTCGATGATACATCGCCGTCCATTTACTCCAGAATACAGTAGTATTTTGCAGACAAAAATTCC
GTAAATGGATTATTCGTTTA

Product: lipoprotein, NlpC/P60 family

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPR
ETKEQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI

Sequences:

>Translated_154_residues
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPR
ETKEQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
>Mature_154_residues
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPR
ETKEQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=154, Percent_Identity=98.7012987012987, Blast_Score=321, Evalue=2e-89,
Organism=Escherichia coli, GI1788501, Length=127, Percent_Identity=48.8188976377953, Blast_Score=131, Evalue=2e-32,
Organism=Escherichia coli, GI1787944, Length=119, Percent_Identity=36.9747899159664, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1786421, Length=119, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 17318; Mature: 17318

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEECCCCCCCCC
DCSGFVVVTMRDRFDLQLPRETKEQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYD
CCCCEEEEEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
TNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
CCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQSWHGTPYRYGGMTRRGV
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEECCCCCCCCC
DCSGFVVVTMRDRFDLQLPRETKEQASIGTQIDKDELLPGDLVFFKTGSGQNGLHVGIYD
CCCCEEEEEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
TNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI
CCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]